1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacaggatatctgtgtgtttaatgtcgtttcatttaggaattgaatcatatgagttcactgaatagcttgagcaatggcatgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTCGTGCAAAACAGCTCCAACCAAATGAGTACAGCTCTG
species | Oryza sativa |
transcript | LOC_Os08g33440.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTEST: gi|86502788|gb|CI145421.1|CI145421
genomic: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
EST: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTEST: gi|58585893|gb|CF984201.1|CF984201
genomic: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
EST: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTEST: gi|88740335|gb|CI763843.1|CI763843
genomic: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
EST: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTEST: gi|86499821|gb|CI142454.1|CI142454
genomic: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
EST: GATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTEST: gi|86493670|gb|CI136303.1|CI136303
genomic: GATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
EST: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTEST: gi|27920911|gb|CB096719.1|CB096719
genomic: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
EST: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTEST: gi|86497312|gb|CI139945.1|CI139945
genomic: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
EST: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTEST: gi|86504362|gb|CI146995.1|CI146995
genomic: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
EST: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCCAAGAAAGCEST: gi|86858948|gb|CI275150.1|CI275150
genomic: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGT-CAAGAAAGC
EST: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTEST: gi|86597928|gb|CI276714.1|CI276714
genomic: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
EST: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTEST: gi|86499205|gb|CI141838.1|CI141838
genomic: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
EST: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTEST: gi|86501092|gb|CI143725.1|CI143725
genomic: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
EST: TTGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTEST: gi|66912791|gb|CX099639.1|CX099639
genomic: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
EST: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTEST: gi|58688879|gb|CK077566.1|CK077566
genomic: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
EST: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTEST: gi|86501837|gb|CI144470.1|CI144470
genomic: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
EST: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTEST: gi|86859001|gb|CI276951.1|CI276951
genomic: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
EST: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAG TTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
genomic: TCGCAATCGATGGTGGGCTCATTACACCTGTTCTGGAGGATGCTGATAAGgtacaggata ... catgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCT
ttaggaattgaatcatatgagttcactgaatagcttgagcaatggcatgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTCGTGCAAAACAGCTCCAACCAAATGAGTACAGCTCTG
aattgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaggatatctgtgtgtttaatgtcgtttcatttaggaattgaatcatatgagttcactgaatagcttgagcaatggcatgatgcagTTGGATATATATTTGCTCTCACAAAAATGGAAGGAACTAGTCAAGAAAGCTCGTGCAAAACAGCTCCAACCAAATGAGTACAGCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC