1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acttgttcctttcccagcaaattgtctgtaaatctttttttgcacttataacttgaatgattatcatactcatttccagtgaaaacttgttcatgcatagGTAGTGGAGAAAAACAAGGACATTGAGTCAACTTGGCGGTGTGGTGCATTGCAAGGAATTCTTAAAGAGGTTCACTCGCTTTTCACAATGTTCCACGGAC
species | Oryza sativa |
transcript | LOC_Os08g33076.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACACTCCCATGTTTTTTACCAAGCTGAAGCAGATATATGGATGGTTCTG GTAGTGGAGAAAAACAAGGACATTGAGTCAACTTGGCGGTGTGGTGCATTGEST: gi|29662692|gb|CB658967.1|CB658967
genomic: AACACTCCCATGTTTTTTACCAAGCTGAAGCAGATATATGGATGGTTCTGgtaatggctg ... tcatgcatagGTAGTGGAGAAAAACAAGGACATTGAGTCAACTTGGCGGTGTGGTGCATTG
EST: AACACTCCCATGTTTTTTACCAAGCTGAAGCAGATATATGGATGGTTCTG GTAGTGGAGAAAAACAAGGACATTGAGTCAACTTGGCGGTGTGGTGCATTG
genomic: AACACTCCCATGTTTTTTACCAAGCTGAAGCAGATATATGGATGGTTCTGgtaatggctg ... tcatgcatagGTAGTGGAGAAAAACAAGGACATTGAGTCAACTTGGCGGTGTGGTGCATTG
ttataacttgaatgattatcatactcatttccagtgaaaacttgttcatgcatagGTAGTGGAGAAAAACAAGGACATTGAGTCAACTTGGCGGTGTGGTGCATTGCAAGGAATTCTTAAAGAGGTTCACTCGCTTTTCACAATGTTCCACGGAC
ttataac putative branch site (score: 21)
cttgttc putative PPT
aatgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttgttcctttcccagcaaattgtctgtaaatctttttttgcacttataacttgaatgattatcatactcatttccagtgaaaacttgttcatgcatagGTAGTGGAGAAAAACAAGGACATTGAGTCAACTTGGCGGTGTGGTGCATTGCAAGGAATTCTTAAAGAGGTTCACTCGCTTTTCACAATGTTCCACGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - cccagca
- - - - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - ttgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgaaaa