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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattaatcgaggctaatcgatagaactgatatactatgatagtatatactacagactatctgaacatagtatattgaagtccacaacaccaattttgcagGCTGCTACAGGAGAAGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAG

Basic information

species Oryza sativa
transcript LOC_Os08g32850.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g32850.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G702490_T01 (Zea mays), 3'ss of exon 2
aattaa--tcgaggctaatcgatagaactgatatactatgatagtatatactacagactatctgaaca-tagtatattgaagtccacaacaccaatttt-gcagGCTGCTACAGGAGAAGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAG
 |||||     |   ||  | |||  |   |||||  |   ||| | || | || | | || |||  | |  |   || ||||| | |    || |||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||| ||||||||||
tattaaaacaaaaattatcctatatcatatatataa-accgtagca-atgc-acgggc-atatgactagtcatgccttaaagtctaaaggtgcattttttgtagGCTGCTACAGGAGAGGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTACATTGCAAGGTATCAGGAGTCTCAGATCATTTTGCACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29640036|gb|CB645045.1|CB645045
EST:     TAGTAAAGGGAAATGGAACAATATTTCTAGCTGGTCCACCACTTGTAAAG                         GCTGCTACAGGAGAAGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTG
genomic: TAGTAAAGGGAAATGGAACAATATTTCTAGCTGGTCCACCACTTGTAAAGgtgagtgttc ... aattttgcagGCTGCTACAGGAGAAGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTG
EST: gi|29674091|gb|CB670366.1|CB670366
EST:     TAGTAAAGGGAAATGGAACAATATTTCTAGCTGGTCCACCACTTGTAAAG                         GCTGCTACAGGAGAAGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTG
genomic: TAGTAAAGGGAAATGGAACAATATTTCTAGCTGGTCCACCACTTGTAAAGgtgagtgttc ... aattttgcagGCTGCTACAGGAGAAGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTG
EST: gi|29640074|gb|CB645083.1|CB645083
EST:     TAGTAAAGGGAAATGGAACAATATTTCTAGCTGGTCCACCACTTGTAAAG                         GCTGCTACAGGAGAAGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTG
genomic: TAGTAAAGGGAAATGGAACAATATTTCTAGCTGGTCCACCACTTGTAAAGgtgagtgttc ... aattttgcagGCTGCTACAGGAGAAGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTG
EST: gi|29681516|gb|CB677791.1|CB677791
EST:     TAGTAAAGGGAAATGGAACAATATTTCTAGCTGGTCCACCACTTGTAAAG                         GCTGCTACAGGAGAAGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTG
genomic: TAGTAAAGGGAAATGGAACAATATTTCTAGCTGGTCCACCACTTGTAAAGgtgagtgttc ... aattttgcagGCTGCTACAGGAGAAGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactacagactatctgaacatagtatattgaagtccacaacaccaattttgcagGCTGCTACAGGAGAAGAGATATCTGCTGAGGACCTTGGTGGAGCATCAGTGCATTGTAAGATATCAGGAGTCTCTGATCACTTTGCACAAG
                    atagtatatt  TA-rich tract