1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acttttgtaatgcatctagtttacttttgtaaagtgggtactggcttactgtgcattacttcactaacctcacagctgacatatttttgggtaaccatagGGACGGAAGGAGGATAAAAAAATGGAGGAAGATGATAGGTGTTGGTGGTAGTGACTGGAAACATTATGTTAGAAGAAACCCTCATGTGGTTAAAAGAAGA
species | Oryza sativa |
transcript | LOC_Os08g31840.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAG GGACGGAAGGAGGATNNNNNNNTGGAGGAAGATGATAGGTGTTGGTGGTAGEST: gi|218502114|gb|FG959502.1|FG959502
genomic: CCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAGgtatgtaatg ... gtaaccatagGGACGGAAGGAGGATAAAAAAATGGAGGAAGATGATAGGTGTTGGTGGTAG
EST: CCTGATGGAATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAG GGACGGAAGGAGGATNNNNNNNTGGAGGAAGATGATAGGTGTTGGTGGTAGEST: gi|29666045|gb|CB662320.1|CB662320
genomic: CCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAGgtatgtaatg ... gtaaccatagGGACGGAAGGAGGATAAAAAAATGGAGGAAGATGATAGGTGTTGGTGGTAG
EST: CCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAG GGACGGAAGGAGGATNNNNNNNTGGAGGAAGATGATAGGTGTTGGTGGTAG
genomic: CCTGATGGGATTTCGAAGAGTAAATTCATACATGAACGTGAGCGTGAAAGgtatgtaatg ... gtaaccatagGGACGGAAGGAGGATAAAAAAATGGAGGAAGATGATAGGTGTTGGTGGTAG
ttactgtgcattacttcactaacctcacagctgacatatttttgggtaaccatagGGACGGAAGGAGGATAAAAAAATGGAGGAAGATGATAGGTGTTGGTGGTAGTGACTGGAAACATTATGTTAGAAGAAACCCTCATGTGGTTAAAAGAAGA
acatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttttgtaatgcatctagtttacttttgtaaagtgggtactggcttactgtgcattacttcactaacctcacagctgacatatttttgggtaaccatagGGACGGAAGGAGGATAAAAAAATGGAGGAAGATGATAGGTGTTGGTGGTAGTGACTGGAAACATTATGTTAGAAGAAACCCTCATGTGGTTAAAAGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
-cttttgt
- - - - -atgcatc
- - - - - - - - - - - - - - - - - - ggtactg
- - - - - - - - - - - - - - - - - - - - - - cttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgaca