1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cgatgattgcccatcagctaatctgttgatagcagtattctggatttgcttctctcaatagttatttcgacggtaaccctttttgcttttactctcccagTTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGAAAAACTTGAGATGTGTGCACAATAATTCTCAAGGGAGAAATATTCCAGA
species | Oryza sativa |
transcript | LOC_Os08g26870.5 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTTAGTGAGAGTGATGAAGATTATGTTAATTCTACTGTGCTAGAAGCAG TTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGAEST: gi|58687907|gb|CK076594.1|CK076594
genomic: CTTTAGTGAGAGTGATGAAGATTATGTTAATTCTACTGTGCTAGAAGCAGgtactttgcc ... actctcccagTTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGA
EST: CTTTAGTGAGAGTGATGAAGATTATGTTAATTCTACTGTGCTAGAAGCAG TTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGAEST: gi|218495687|gb|FG969804.1|FG969804
genomic: CTTTAGTGAGAGTGATGAAGATTATGTTAATTCTACTGTGCTAGAAGCAGgtactttgcc ... actctcccagTTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGA
EST: CTTTAGTGAGAGTGATGAAGATTATGTTAATTCTACTGTGCTAGAAGCAG TTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGAEST: gi|58692668|gb|CK081355.1|CK081355
genomic: CTTTAGTGAGAGTGATGAAGATTATGTTAATTCTACTGTGCTAGAAGCAGgtactttgcc ... actctcccagTTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGA
EST: CTTTAGTGAGAGTGATGAAGATTATGTTAATTCTACTGTGCTAGAAGCAG TTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGAEST: gi|29629366|gb|CB634377.1|CB634377
genomic: CTTTAGTGAGAGTGATGAAGATTATGTTAATTCTACTGTGCTAGAAGCAGgtactttgcc ... actctcccagTTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGA
EST: CTTTAGTGAGAGTGATGAAGATTATGTTAATTCTACTGTGCTAGAAGCAG TTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGAEST: gi|33683462|gb|CF311701.1|CF311701
genomic: CTTTAGTGAGAGTGATGAAGATTATGTTAATTCTACTGTGCTAGAAGCAGgtactttgcc ... actctcccagTTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGA
EST: CTTTAGTGAGAGTGATGAAGATTATGTTAATTCTACTGTGCTAGAAGCAG TTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGAEST: gi|58605333|gb|CK033366.1|CK033366
genomic: CTTTAGTGAGAGTGATGAAGATTATGTTAATTCTACTGTGCTAGAAGCAGgtactttgcc ... actctcccagTTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGA
EST: CTTTAGTGAGAGTGATGAAGATTATGTTAATTCTACTGTGCTAGAAGCAG TTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGA
genomic: CTTTAGTGAGAGTGATGAAGATTATGTTAATTCTACTGTGCTAGAAGCAGgtactttgcc ... actctcccagTTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGA
ttgcttctctcaatagttatttcgacggtaaccctttttgcttttactctcccagTTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGAAAAACTTGAGATGTGTGCACAATAATTCTCAAGGGAGAAATATTCCAGA
cggtaac putative branch site (score: 3)
ccctttttgcttttac CT-rich tract
aatagttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgatgattgcccatcagctaatctgttgatagcagtattctggatttgcttctctcaatagttatttcgacggtaaccctttttgcttttactctcccagTTGAGGTGAGAAGTGGGGCAGAGGGATATGTAATCAAGATGCGAGATGGGAAAAACTTGAGATGTGTGCACAATAATTCTCAAGGGAGAAATATTCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- -tgattgc
- - - - - -catcagc
- - - - - - - - - - - ctgttga
- - - - - - - - - - - - - - - - - -tattctg
- - - - - - - - - - - - - - - - - - - - - - - tgcttct