1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...caacacttgtcgtttcagttagttactgaagatggctgtgtttgtaggatcccaatctatcttatacaagtactgattttgttttatattctgacctcagGGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAATGTTATGGAGTTTCTAATTCTGGCTGGAGATCACCTTTACCGCATGGACT
species | Oryza sativa |
transcript | LOC_Os08g25734.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAG GGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAATEST: gi|58678083|gb|CK066770.1|CK066770
genomic: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAGgtatcatact ... ctgacctcagGGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAAT
EST: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAG TEST: gi|58678083|gb|CK066770.1|CK066770
genomic: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAGgtatcatact ... ctgacctcag-
EST: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAG TEST: gi|15847618|gb|BI795908.1|BI795908
genomic: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAGgtatcatact ... ctgacctcag-
EST: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAG GGTACT-CAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAATEST: gi|5456476|gb|AU075787.1|AU075787
genomic: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAGgtatcatact ... ctgacctcagGGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAAT
EST: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAG GGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAATEST: gi|29614233|gb|CB619246.1|CB619246
genomic: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAGgtatcatact ... ctgacctcagGGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAAT
EST: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAG GGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAATEST: gi|88544256|gb|CI474337.1|CI474337
genomic: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAGgtatcatact ... ctgacctcagGGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAAT
EST: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAG GGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAATEST: gi|29681248|gb|CB677523.1|CB677523
genomic: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAGgtatcatact ... ctgacctcagGGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAAT
EST: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAG GGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAATEST: gi|58673132|gb|CK061818.1|CK061818
genomic: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAGgtatcatact ... ctgacctcagGGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAAT
EST: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAG GGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAATEST: gi|58668409|gb|CK057095.1|CK057095
genomic: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAGgtatcatact ... ctgacctcagGGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAAT
EST: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAG GGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAAT
genomic: TTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAGgtatcatact ... ctgacctcagGGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAAT
aggatcccaatctatcttatacaagtactgattttgttttatattctgacctcagGGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAATGTTATGGAGTTTCTAATTCTGGCTGGAGATCACCTTTACCGCATGGACT
ttctgac putative branch site (score: 659)
tgattttgttttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacacttgtcgtttcagttagttactgaagatggctgtgtttgtaggatcccaatctatcttatacaagtactgattttgttttatattctgacctcagGGTACTGCAGATGCTGTAAGACAGTACTTATGGCTATTTGAGGAGCATAATGTTATGGAGTTTCTAATTCTGGCTGGAGATCACCTTTACCGCATGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - ttactga
- - - - - - - - - - - - - - - -atggctg
- - - - - - - - - - - - - - - - - - - tgtttgt