1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatcattttttttcttatcttatttatatatttgtgatgggttgctgatgaaatggttgctcattagtttactaatgggtgctattgtgctttgtgtgtaaagTTCGGCGCCGATCAGAGAGTATGGAGGGCCTGTTCTCGTTTGACGAGAGGAAAGATCGAAGGTCAGATGTGGAGAACTCGGAGGACGAGCGGAGAAGGCT
species | Oryza sativa |
transcript | LOC_Os08g25310.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCAAACAGCCTGCAAATTAGGTCTCCTGCTCTTTCCATCAAAATGTCAG TTCGGCGCCGATCAGAGAGTATGGAGGGCCTGTTCTCGTTTGACGAGAGGAEST: gi|29638640|gb|CB643649.1|CB643649
genomic: ATCAAACAGCCTGCAAATTAGGTCTCCTGCTCTTTCCATCAAAATGTCAGgtatcatttt ... gtgtgtaaagTTCGGCGCCGATCAGAGAGTATGGAGGGCCTGTTCTCGTTTGACGAGAGGA
EST: ATCAAACAGCCTGCAAATTAGGTCTCCTGCTCTTTCCATCAAAATGTCAG TTCGGCGCCGATCAGAGAGTATGGAGGGCCTGTTCTCGTTTGACGAGAGGAEST: gi|88355117|gb|CI651820.1|CI651820
genomic: ATCAAACAGCCTGCAAATTAGGTCTCCTGCTCTTTCCATCAAAATGTCAGgtatcatttt ... gtgtgtaaagTTCGGCGCCGATCAGAGAGTATGGAGGGCCTGTTCTCGTTTGACGAGAGGA
EST: ATCAAACAGCCTGCAAATTAGGTCTCCTGCTCTTTCCATCAAAATGTCAG TTCGGCGCCGATCAGAGAGTATGGAGGGCCTGTTCTCGTTTGACGAGAGGAEST: gi|29675314|gb|CB671589.1|CB671589
genomic: ATCAAACAGCCTGCAAATTAGGTCTCCTGCTCTTTCCATCAAAATGTCAGgtatcatttt ... gtgtgtaaagTTCGGCGCCGATCAGAGAGTATGGAGGGCCTGTTCTCGTTTGACGAGAGGA
EST: ATCAAACAGCCTGCAAATTAGGTCTCCTGCTCTTTCCATCAAAATGTCAG TTCGGCGCCGATCAGAGAGTATGGAGGGCCTGTTCTCGTTTGACGAGAGGA
genomic: ATCAAACAGCCTGCAAATTAGGTCTCCTGCTCTTTCCATCAAAATGTCAGgtatcatttt ... gtgtgtaaagTTCGGCGCCGATCAGAGAGTATGGAGGGCCTGTTCTCGTTTGACGAGAGGA
tgaaatggttgctcattagtttactaatgggtgctattgtgctttgtgtgtaaagTTCGGCGCCGATCAGAGAGTATGGAGGGCCTGTTCTCGTTTGACGAGAGGAAAGATCGAAGGTCAGATGTGGAGAACTCGGAGGACGAGCGGAGAAGGCT
tactaat putative branch site (score: 10)
attagtttactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcattttttttcttatcttatttatatatttgtgatgggttgctgatgaaatggttgctcattagtttactaatgggtgctattgtgctttgtgtgtaaagTTCGGCGCCGATCAGAGAGTATGGAGGGCCTGTTCTCGTTTGACGAGAGGAAAGATCGAAGGTCAGATGTGGAGAACTCGGAGGACGAGCGGAGAAGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA