1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttatacatgcaagctatctaactgtgggggaatgtacatgcttctcggtcaactttatcatggtaatgttttacattctgtttggttttggcatgtacagACTGGACAATGTCTGAAGGAGTCAGACAAAGAGCAAGGACATCAGAAAACAATTACTTCACTTTCAAAATCTGCAGATTGGTCGCATTTCCTAACAGGCT
species | Oryza sativa |
transcript | LOC_Os08g21660.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTATCATCANCGNCGGTGAGGATGCTACCATCCGCATTTGGGACACAGAG ACTGGACAATGTCTGAAGGAGTCAGACAAAGAGCAAAGGACATCAGNAAACEST: gi|29637697|gb|CB642706.1|CB642706
genomic: CTATCATCACCGCCGGTGAGGATGCTACCATCCGCATTTGGGACACAGAGgttagctcgg ... gcatgtacagACTGGACAATGTCTGAAGGAGTCAGACAAAGAGCAA-GGACATCAGAAAAC
EST: CTATCATCACCGCCGGAGAGGATGCTACCATCCGCATTTGGGACACAGAG ACTGGACAATGTCTGAAGGAGTCAGACAAAGAGCAAGGACATCAGATAACAEST: gi|58693998|gb|CK082685.1|CK082685
genomic: CTATCATCACCGCCGGTGAGGATGCTACCATCCGCATTTGGGACACAGAGgttagctcgg ... gcatgtacagACTGGACAATGTCTGAAGGAGTCAGACAAAGAGCAAGGACATCAGAAAACA
EST: CTATCATCACCGCCGGTGAGGATGCTACCATCCGCATTTGGGACACAGAG ACTGGACAATGTCTGAAGGAGTCAGACAAAGAGCAAGGACATCAGAAAACAEST: gi|117231350|gb|CT846816.1|CT846816
genomic: CTATCATCACCGCCGGTGAGGATGCTACCATCCGCATTTGGGACACAGAGgttagctcgg ... gcatgtacagACTGGACAATGTCTGAAGGAGTCAGACAAAGAGCAAGGACATCAGAAAACA
EST: CTATCATCACCGCCGGTGAGGATGCTACCATCCGCATTTGGGACACAGAG ACTGGACAATGTCTGAAGGAGTCAGACAAAGAGCAAGGACATCAGAAAACAEST: gi|218496815|gb|FG950901.1|FG950901
genomic: CTATCATCACCGCCGGTGAGGATGCTACCATCCGCATTTGGGACACAGAGgttagctcgg ... gcatgtacagACTGGACAATGTCTGAAGGAGTCAGACAAAGAGCAAGGACATCAGAAAACA
EST: CTATCATCACCGCCGGTGAGGATGCTACCATCCGCATTTGGGACACAGAG ACTGGACAATGTCTGAAGGAGTCAGACAAAGAGCAAGGACATCAGAAAACA
genomic: CTATCATCACCGCCGGTGAGGATGCTACCATCCGCATTTGGGACACAGAGgttagctcgg ... gcatgtacagACTGGACAATGTCTGAAGGAGTCAGACAAAGAGCAAGGACATCAGAAAACA
cggtcaactttatcatggtaatgttttacattctgtttggttttggcatgtacagACTGGACAATGTCTGAAGGAGTCAGACAAAGAGCAAGGACATCAGAAAACAATTACTTCACTTTCAAAATCTGCAGATTGGTCGCATTTCCTAACAGGCT
taatgttttacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatacatgcaagctatctaactgtgggggaatgtacatgcttctcggtcaactttatcatggtaatgttttacattctgtttggttttggcatgtacagACTGGACAATGTCTGAAGGAGTCAGACAAAGAGCAAGGACATCAGAAAACAATTACTTCACTTTCAAAATCTGCAGATTGGTCGCATTTCCTAACAGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- -tacatgc