1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtgtttcttccacttctatagtttatttcaagacatgaaaccttatgttgaaatagatagtgtatacgagtgagtaatgataatgatgttacttctgcagAACGCTGAACATGAAAGTCGTCTGCGAAGGTCAGCACAGTCCAAAGTGCCATCAGATCCTAACATATGGTTTCAGATGCGTGAGAACTATGAAAAGATAA
species | Oryza sativa |
transcript | LOC_Os08g21350.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTACTGCTTCCCCATCATCAAGGGAGCTTGCACAGCGGCTCTTAAAGAAG AACGCTGAACATGAAAGTCGTCTGCGAAGGTCAGCACAGTCCAAAGTGCCAEST: gi|88326869|gb|CI675576.1|CI675576
genomic: CTACTGCTTCCCCATCATCAAGGGAGCTTGCACAGCGGCTCTTAAAGAAGgtttgctctt ... acttctgcagAACGCTGAACATGAAAGTCGTCTGCGAAGGTCAGCACAGTCCAAAGTGCCA
EST: CTACTGCTTCCCCATCATCAAGGGAGCTTGCACAGCGGCTCTTAAAGAAG AACGCTGAACATGAAAGTCGTCTGCGAAGGTCAGCACAGTCCAAAGTGCCAEST: gi|88453560|gb|CI681385.1|CI681385
genomic: CTACTGCTTCCCCATCATCAAGGGAGCTTGCACAGCGGCTCTTAAAGAAGgtttgctctt ... acttctgcagAACGCTGAACATGAAAGTCGTCTGCGAAGGTCAGCACAGTCCAAAGTGCCA
EST: CTACTGCTTCCCCATCATCAAGGGAGCTTGCACAGCGGCTCTTAAAGAAG AACGCTGAACATGAAAGTCGTCTGCGAAGGTCAGCACAGTCCAAAGTGCCA
genomic: CTACTGCTTCCCCATCATCAAGGGAGCTTGCACAGCGGCTCTTAAAGAAGgtttgctctt ... acttctgcagAACGCTGAACATGAAAGTCGTCTGCGAAGGTCAGCACAGTCCAAAGTGCCA
tgttgaaatagatagtgtatacgagtgagtaatgataatgatgttacttctgcagAACGCTGAACATGAAAGTCGTCTGCGAAGGTCAGCACAGTCCAAAGTGCCATCAGATCCTAACATATGGTTTCAGATGCGTGAGAACTATGAAAAGATAA
ttacttct CT-rich tract
taatgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtttcttccacttctatagtttatttcaagacatgaaaccttatgttgaaatagatagtgtatacgagtgagtaatgataatgatgttacttctgcagAACGCTGAACATGAAAGTCGTCTGCGAAGGTCAGCACAGTCCAAAGTGCCATCAGATCCTAACATATGGTTTCAGATGCGTGAGAACTATGAAAAGATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG