1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtgagttaaagcttcataatttccttgtatcatgtttttttctttaagcaagttgtatggttgtctctttttcttttttgtttacacatcgagtgattttgcatgtctctctgctataagtccttttgaattcagtattttctaattgaagatgcacttttgcagTCTCTTGAGAGGGCATATGGCTGCAAGCTGTGTATTGGGCCATGTACTACAAGAGGGGAG
species | Oryza sativa |
transcript | LOC_Os08g19850.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGAAGGGCGTGACACCTTCTGGCACTCAAGTGCTCATATTCTTGGAGAA TCTCTTGAGAGGGCATATGGCTGCAAGCTGTGTATTGGGCCATGTACTACAEST: gi|58689159|gb|CK077846.1|CK077846
genomic: ATGAAGGGCGTGACACCTTCTGGCACTCAAGTGCTCATATTCTTGGAGAAgtgagttaaa ... acttttgcagTCTCTTGAGAGGGCATATGGCTGCAAGCTGTGTATTGGGCCATGTACTACA
EST: ATGAAGGGCGTGACACCTTCTGGCACTCAAGTGCTCATATTCTTGGAGAA TCTCTTGAGAGGGCATATGGCTGCAAGCTGTGTATTGGGCCATGTACTACAEST: gi|29657070|gb|CB653345.1|CB653345
genomic: ATGAAGGGCGTGACACCTTCTGGCACTCAAGTGCTCATATTCTTGGAGAAgtgagttaaa ... acttttgcagTCTCTTGAGAGGGCATATGGCTGCAAGCTGTGTATTGGGCCATGTACTACA
EST: ATGAAGGGCGTGACACCTTCTGGCACTCAAGTGCTCATATTCTTGGAGAA TCTCTTGAGAGGGCATATGGCTGCAAGCTGTGTATTGGGCCATGTACTACA
genomic: ATGAAGGGCGTGACACCTTCTGGCACTCAAGTGCTCATATTCTTGGAGAAgtgagttaaa ... acttttgcagTCTCTTGAGAGGGCATATGGCTGCAAGCTGTGTATTGGGCCATGTACTACA
ctgctataagtccttttgaattcagtattttctaattgaagatgcacttttgcagTCTCTTGAGAGGGCATATGGCTGCAAGCTGTGTATTGGGCCATGTACTACAAGAGGGGAG
ttctaat putative branch site (score: 37)
cactttt putative PPT
tattttctaattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttaaagcttcataatttccttgtatcatgtttttttctttaagcaagttgtatggttgtctctttttcttttttgtttacacatcgagtgattttgcatgtctctctgctataagtccttttgaattcagtattttctaattgaagatgcacttttgcagTCTCTTGAGAGGGCATATGGCTGCAAGCTGTGTATTGGGCCATGTACTACAAGAGGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG