1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taaattgagagggttttagtattttgctaagttagtttttggtagactggtatcaatcaaattgattaaagaaaatgacaaactggaaattcatggacagGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATGATCAGGCAGATAGCGAGGCAAACATGTATGATCCAAGCTTGGATGGAGC
species | Oryza sativa |
transcript | LOC_Os08g19650.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAG GTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATGEST: gi|29685658|gb|CB681933.1|CB681933
genomic: GCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGgtacaacctt ... tcatggacagGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATG
EST: GCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAG GTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATGEST: gi|29639210|gb|CB644219.1|CB644219
genomic: GCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGgtacaacctt ... tcatggacagGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATG
EST: AGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAG GTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATGEST: gi|38469479|gb|CF953610.1|CF953610
genomic: AGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGgtacaacctt ... tcatggacagGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATG
EST: AGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAG GTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGATGGTGAAGATGEST: gi|58589921|gb|CF988229.1|CF988229
genomic: AGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGgtacaacctt ... tcatggacagGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATG
EST: AGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAG GTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGATGGTGAAGATGEST: gi|58689922|gb|CK078609.1|CK078609
genomic: AGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGgtacaacctt ... tcatggacagGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATG
EST: AGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAG GTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGATGGTGAAGATG
genomic: AGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGgtacaacctt ... tcatggacagGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATG
actggtatcaatcaaattgattaaagaaaatgacaaactggaaattcatggacagGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATGATCAGGCAGATAGCGAGGCAAACATGTATGATCCAAGCTTGGATGGAGC
aattgat putative branch site (score: 17)
aatcaaattgattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaattgagagggttttagtattttgctaagttagtttttggtagactggtatcaatcaaattgattaaagaaaatgacaaactggaaattcatggacagGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATGATCAGGCAGATAGCGAGGCAAACATGTATGATCCAAGCTTGGATGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - -ttttgct
- - - - - - - - - - - - - - - - - gtttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaact