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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggcgcgggcgatctcgtctcctccggggtttcggttttgtgcttttgcaccttggggtttttgaggttggggttggggtggcggtggctgatttggttggttggtttggtggtgtgtgatgtttgtgtcgcagTGACGGTGGCGGTGGCGCGGCGGCGGCGTTCGCGGACGCGGGGAACCTCGAGCACTGCGCCAGGTACCTCAACCAGACGCTCGTCACCTTCGGCTTCCCG

Basic information

species Oryza sativa
transcript LOC_Os08g14460.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g14460.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G147500_T06 (Zea mays), 3'ss of exon 2
gtgaggcgcgggcgatctcgtctcctccggggtttcggttttgtgcttttgcaccttggggtttttgaggttggggttggggtggcggtggctgatttggttggttg-gtttggtggtgtgtgatgtttgtgtcgcagTGACGGTGGCGGTGGCGCGGCGGCGGCGTTCGCGGACGCGGGGAACCTCGAGCACTGCGCCAGGTACCTCAACCAGACGCTCGTCACCTTCGGCTTCCCG---------------
                                               |  || ||        | |  |||| | ||| | |    || |  |||||  | ||   | | || | || ||| | || |||||  |||| ||||| |||               ||||||||  |||||| |||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||               
----------------------------------------------gtgagcgccaatttccctcttgggttcgagttcgag----ggggtttgattctgatgtcagtggtttgcggcgtg-gctgcttgtgcagcagCGACGGGGGC---------------GCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGGTACCTGAACCAGACGCTCGTCACCTTCGGATTCCCGGCATCTCTCGACCTC

upper sequence: LOC_Os08g14460.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G147500_T04 (Zea mays), 3'ss of exon 2
gtgaggcgcgggcgatctcgtctcctccggggtttcggttttgtgcttttgcaccttggggtttttgaggttggggttggggtggcggtggctgatttggttggttg-gtttggtggtgtgtgatgtttgtgtcgcagTGACGGTGGCGGTGGCGCGGCGGCGGCGTTCGCGGACGCGGGGAACCTCGAGCACTGCGCCAGGTACCTCAACCAGACGCTCGTCACCTTCGGCTTCCCG------------
                                               |  || ||        | |  |||| | ||| | |    || |  |||||  | ||   | | || | || ||| | || |||||  |||| ||||| |||               ||||||||  |||||| |||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||            
----------------------------------------------gtgagcgccaatttccctcttgggttcgagttcgag----ggggtttgattctgatgtcagtggtttgcggcgtg-gctgcttgtgcagCAGCGACGGGGGC---------------GCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGGTACCTGAACCAGACGCTCGTCACCTTCGGATTCCCGGCATCTCTCGAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggcggtggctgatttggttggttggtttggtggtgtgtgatgtttgtgtcgcagTGACGGTGGCGGTGGCGCGGCGGCGGCGTTCGCGGACGCGGGGAACCTCGAGCACTGCGCCAGGTACCTCAACCAGACGCTCGTCACCTTCGGCTTCCCG
       ggctgat  putative branch site (score: 4)