1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgcagaaactctgtttatctgccagtactttattttaattttacatttgaaaacaatgtaaaagcagatgtttgattataaggttgctgacaatttcagGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGATTTGTTCCATGGACAACCCTACACATTTGACCAGAACCGTACAGAATGG
species | Oryza sativa |
transcript | LOC_Os08g14109.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGGATTCGAAGCGCCATTGCTGAG GAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGAEST: gi|86847434|gb|CI287012.1|CI287012
genomic: TCGGATTCGAAGCGCCATTGCTGAGgtacaatctt ... acaatttcagGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGA
EST: TCGGATTCGAAGCGCCATTGCTGAG GAAAATAGCTGATAAAEST: gi|117243713|gb|CT843193.1|CT843193
genomic: TCGGATTCGAAGCGCCATTGCTGAGgtacaatctt ... acaatttcagGAAAATAGCTGATAAA
EST: TCGGATTCGAAGCGCCATTGCTGAG GAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGAEST: gi|5005343|gb|AU070505.1|AU070505
genomic: TCGGATTCGAAGCGCCATTGCTGAGgtacaatctt ... acaatttcagGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGA
EST: TCGGATTCGAAGCGCCATTGCTGAG GAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGAEST: gi|88333622|gb|CI656694.1|CI656694
genomic: TCGGATTCGAAGCGCCATTGCTGAGgtacaatctt ... acaatttcagGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGA
EST: TCGGATTCGAAGCGCCATTGCTGAG GAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGAEST: gi|88305767|gb|CI633337.1|CI633337
genomic: TCGGATTCGAAGCGCCATTGCTGAGgtacaatctt ... acaatttcagGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGA
EST: TCGGATTCGAAGCGCCATTGCTGAG GAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGA
genomic: TCGGATTCGAAGCGCCATTGCTGAGgtacaatctt ... acaatttcagGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGA
atttgaaaacaatgtaaaagcagatgtttgattataaggttgctgacaatttcagGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGATTTGTTCCATGGACAACCCTACACATTTGACCAGAACCGTACAGAATGG
tgctgac putative branch site (score: 8)
aaaacaatgtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcagaaactctgtttatctgccagtactttattttaattttacatttgaaaacaatgtaaaagcagatgtttgattataaggttgctgacaatttcagGAAAATAGCTGATAAAGTTGGTCTAGCCGGATATTACGTCGTTGTGCCTGATTTGTTCCATGGACAACCCTACACATTTGACCAGAACCGTACAGAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
-tgcagaa
- - - - - tctgttt
- - - - - - - - - -ctgccag
- - - - - - - - - - - - - - - - - - - - - -acatttg
- - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgctg