1 5' 3' | 2 5' 3' | 3 5' 3' |
...acatattgttcagcttacagtgaactgtcatacctgagctataacataaaaggtgcatatatacacactgtttagcttacagtaagctacaaccttgcagGTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGCGCCGCAGTTGCTTACGCCG
species | Oryza sativa |
transcript | LOC_Os08g12850.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGTATTGAGGGTGGCTGCGACTGGACATGATAAGAAGCTCTTTTTCAAG GTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGCEST: gi|58596172|gb|CK006700.1|CK006700
genomic: CTGTATTGAGGGTGGCTGCGACTGGACATGATAAGAAGCTCTTTTTCAAGgtatttatca ... aaccttgcagGTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGC
EST: CTGGATTGAGGGTGGCTGCGACTGGACATGATAAGAAGCTCTTTTTCAAG GTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGCEST: gi|88984618|gb|CI009395.1|CI009395
genomic: CTGTATTGAGGGTGGCTGCGACTGGACATGATAAGAAGCTCTTTTTCAAGgtatttatca ... aaccttgcagGTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGC
EST: TGTATTGAGGGTGGCTGCGACTGGACATGATAAGAAGCTCTTTTTCAAG GTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGCEST: gi|58599957|gb|CK010485.1|CK010485
genomic: TGTATTGAGGGTGGCTGCGACTGGACATGATAAGAAGCTCTTTTTCAAGgtatttatca ... aaccttgcagGTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGC
EST: GTGGTGGGAGGGTGGCTGCGACTGGACATGATAAGAAGCTCTTTTTCAAG GTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGCEST: gi|58596444|gb|CK006972.1|CK006972
genomic: GT-AT-TGAGGGTGGCTGCGACTGGACATGATAAGAAGCTCTTTTTCAAGgtatttatca ... aaccttgcagGTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGC
EST: CTGTATGGAGGGTGGCTGCGACTGGACATGATAAGAAGCTCTTTTTCAAG GTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGCEST: gi|58593543|gb|CF991851.1|CF991851
genomic: CTGTATTGAGGGTGGCTGCGACTGGACATGATAAGAAGCTCTTTTTCAAGgtatttatca ... aaccttgcagGTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGC
EST: CTGTATGGAGGGTGGCTGCGACTGGACATGATAAGAAGCTCTTTTTCAAG GTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGCEST: gi|88549856|gb|CI479782.1|CI479782
genomic: CTGTATTGAGGGTGGCTGCGACTGGACATGATAAGAAGCTCTTTTTCAAGgtatttatca ... aaccttgcagGTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGC
EST: CTGCGACTGGACATGATAAGAAGCTCTTTTTCAAG GTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGCEST: gi|88549690|gb|CI479597.1|CI479597
genomic: CTGCGACTGGACATGATAAGAAGCTCTTTTTCAAGgtatttatca ... aaccttgcagGTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGC
EST: TGGACATGATAAGAAGCTCTTTTTCAAG GTGGTTTTTACTCTGTATTTTCTAGCANCTTGGGGGAGGGTGGTGTCAGGGEST: gi|88241574|gb|CI241423.1|CI241423
genomic: TGGACATGATAAGAAGCTCTTTTTCAAGgtatttatca ... aaccttgcagGTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCA-GG
EST: CTGTATTGAGGGTGTCTGCGACTGGACATGATAAGAAGCTCTTTTTCAAG GTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGTTGGTGTCAGGC
genomic: CTGTATTGAGGGTGGCTGCGACTGGACATGATAAGAAGCTCTTTTTCAAGgtatttatca ... aaccttgcagGTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGC
ataaaaggtgcatatatacacactgtttagcttacagtaagctacaaccttgcagGTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGCGCCGCAGTTGCTTACGCCG
agcttac putative branch site (score: 18)
atatataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatattgttcagcttacagtgaactgtcatacctgagctataacataaaaggtgcatatatacacactgtttagcttacagtaagctacaaccttgcagGTGGTTTTTACTCTGTATTTTCTAGCAGCTTTGGGGAGGGTGGTGTCAGGCGCCGCAGTTGCTTACGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - gcttaca
- - - - - - - - - - tgaactg
- - - - - - - - - - - - - - catacct
- - - - - - - - - - - - - - - - - - - - - - cataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - gtgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacacac