1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...actatattagaataaaatttgaaatctagatgctatattttgggatgaatggagtatttttctcatgtgaataattttctttttttgtttatttattcagGAGGGTATACGCATTGAACGTTGTCGGTCAGATACCTGCAGAATTGCAGAACCTCACCTACCTAACTTACTT
species | Oryza sativa |
transcript | LOC_Os08g10310.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGTGCGACTGTTCCTACAACAGCGGCACCGTCTGCCATATTACCCAGCT GAGGGTATACGCATTGAACGTTGTCGGTCAGATACCTGCAGAATTGCAGAAEST: gi|29672540|gb|CB668815.1|CB668815
genomic: AAGTGCGACTGTTCCTACAACAGCGGCACCGTCTGCCATATTACCCAGCTgtacgtatac ... atttattcagGAGGGTATACGCATTGAACGTTGTCGGTCAGATACCTGCAGAATTGCAGAA
EST: AAGTGCGACTGTTCCTACAACAGCGGCACCGTCTGCCATATTACCCAGCT GAGGGTATACGCATTGAACGTTGTCGGTCAGATACCTGCAGAATTGCAGAAEST: gi|88415250|gb|CI584073.1|CI584073
genomic: AAGTGCGACTGTTCCTACAACAGCGGCACCGTCTGCCATATTACCCAGCTgtacgtatac ... atttattcagGAGGGTATACGCATTGAACGTTGTCGGTCAGATACCTGCAGAATTGCAGAA
EST: AAGTGCGACTGTTCCTACAACAGCGGCACCGTCTGCCATATTACCCAGCT GAGGGTATACGCATTGAACGTTGTCG
genomic: AAGTGCGACTGTTCCTACAACAGCGGCACCGTCTGCCATATTACCCAGCTgtacgtatac ... atttattcagGAGGGTATACGCATTGAACGTTGTCG
tgaatggagtatttttctcatgtgaataattttctttttttgtttatttattcagGAGGGTATACGCATTGAACGTTGTCGGTCAGATACCTGCAGAATTGCAGAACCTCACCTACCTAACTTACTT
ttttctttttttgttt CT-rich tract
tcatgtgaataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actatattagaataaaatttgaaatctagatgctatattttgggatgaatggagtatttttctcatgtgaataattttctttttttgtttatttattcagGAGGGTATACGCATTGAACGTTGTCGGTCAGATACCTGCAGAATTGCAGAACCTCACCTACCTAACTTACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - -gaataaa
- - - - - - - - - - - - - -agatgct
- - - - - - - - - - - - - - - - - - - - - - atgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtga