1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tccaaattaatcctgagctagctatatatggaacacatatatctgatgagttggtctcctctcacaaaatactcttaattaatctctcctgaaattgcagGCTGATATGCTGGACAGCCATCATCTGCAGCAAGCACTCCAGCAGCAATACTTCGATCAGATCCCGGTGACGACGACGGCGGCGGCGGACAGCGGCGACA
species | Oryza sativa |
transcript | LOC_Os08g08820.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAACGGCGTGGCGTACGAATCGCCGTCGGCGCAGCTGCCCCTCACCCAG GCTGATATGCTGGACAGCCATCATCTGCAGCAAGCACTCCAGCAGCAATACEST: gi|29637184|gb|CB642193.1|CB642193
genomic: GGAACGGCGTGGCGTACGAATCGCCGTCGGCGCAGCTGCCCCTCACCCAGgtacggtagt ... gaaattgcagGCTGATATGCTGGACAGCCATCATCTGCAGCAAGCACTCCAGCAGCAATAC
EST: GGAACGGCGTGGCGTACGAATCGCCGTCGGCGCAGCTGCCCCTCACCCAG GCTGATATGCTGGACAGCCATCATCTGCAGCAAGCACTCCAGCAGCAATACEST: gi|58660905|gb|CK049585.1|CK049585
genomic: GGAACGGCGTGGCGTACGAATCGCCGTCGGCGCAGCTGCCCCTCACCCAGgtacggtagt ... gaaattgcagGCTGATATGCTGGACAGCCATCATCTGCAGCAAGCACTCCAGCAGCAATAC
EST: GGAACGGCGTGGCGTACGAATCGCCGTCGGCGCAGCTGCCCCTCACCCAG GCTGATATGCTGGACAGCCATCATCTGCAGCAAGCEST: gi|117245156|gb|CT843369.1|CT843369
genomic: GGAACGGCGTGGCGTACGAATCGCCGTCGGCGCAGCTGCCCCTCACCCAGgtacggtagt ... gaaattgcagGCTGATATGCTGGACAGCCATCATCTGCAGCAAGC
EST: GGAACGGCGTGGCGTACGAATCGCCGTCGGCGCAGCTGCCCCTCACCCAG GCTGATATGCTGGACAGCCATCATCTGCAGCAAGCACTCCAGCAGCAATAC
genomic: GGAACGGCGTGGCGTACGAATCGCCGTCGGCGCAGCTGCCCCTCACCCAGgtacggtagt ... gaaattgcagGCTGATATGCTGGACAGCCATCATCTGCAGCAAGCACTCCAGCAGCAATAC
atgagttggtctcctctcacaaaatactcttaattaatctctcctgaaattgcagGCTGATATGCTGGACAGCCATCATCTGCAGCAAGCACTCCAGCAGCAATACTTCGATCAGATCCCGGTGACGACGACGGCGGCGGCGGACAGCGGCGACA
aattaat putative branch site (score: 3)
tctctcctg CT-rich tract
aaaatactcttaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaaattaatcctgagctagctatatatggaacacatatatctgatgagttggtctcctctcacaaaatactcttaattaatctctcctgaaattgcagGCTGATATGCTGGACAGCCATCATCTGCAGCAAGCACTCCAGCAGCAATACTTCGATCAGATCCCGGTGACGACGACGGCGGCGGCGGACAGCGGCGACA
- - - - - -cctgagc
- - - - - - - - - - - - - - - gaacaca
- - - - - - - - - - - - - - - - - - - - - ctgatga