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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttccttcctatccgtccacccctaaattcctttgacgaattcagatgtttattgatgtttggtacaacttgctaagtggccgtccggagcttaacccttccaatctcgatgtgggcagATTAAGAGTGTTCTGATCCAGCTCTACGCACACCCCGGAGACTGCGTTCTTGATCTGGCTTGTGGAAAG

Basic information

species Oryza sativa
transcript LOC_Os08g08200.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g08200.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G042398_T01 (Zea mays), 3'ss of exon 3
--------------gtatttccttcctatccgtccacccctaaattcctttgacgaattcagatgtttattgatgtttggtacaacttgctaagtggccgtccgga--gcttaacccttccaatctcg-atgtgggcagATTAAGAGTGTTCTGATCCAGCTCTACGCACACCCCGGAGACTGCGTTCTTGATCTGGCTTGTGGAAAG
                 || |   ||||||   ||  ||||  ||||  ||||  ||    |  |     || |||||| |||| | || | |||  | |  | ||  |  ||||  ||| | |   |  | ||| ||||| ||||||||| || ||||| | || |||| ||| || ||||||||||||||||| ||||| || |||
gtgggtctcaattcagtttactgccctatcgaaccgtccctggattc--ttgattaaaatgggggacccgtggtgtttgatacatcctg-tgagtaactgcactgacggagtaactgttcaatttgtgtgtttggacagATCAAGAGTGTTTTGGTCCAGTTGTATGCACGCCCGGGTGACTGCGTTCTTGATCTTGCTTGCGGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88350138|gb|CI622069.1|CI622069
EST:     AGGAGCGGGAGAACAGCCCCATCATCCACCTCAAGAAGCTCAACAACTGG                         ATTAAGAGTGTTCTGATCCAGCTCTACGCACACCCCGGAGACTGCGTTCTT
genomic: AGGAGCGGGAGAACAGCCCCATCATCCACCTCAAGAAGCTCAACAACTGGgtatttcctt ... atgtgggcagATTAAGAGTGTTCTGATCCAGCTCTACGCACACCCCGGAGACTGCGTTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaacttgctaagtggccgtccggagcttaacccttccaatctcgatgtgggcagATTAAGAGTGTTCTGATCCAGCTCTACGCACACCCCGGAGACTGCGTTCTTGATCTGGCTTGTGGAAAG
                         gcttaac  putative branch site (score: 3)