1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagatagctcttcttcctataaaatggatgatgaatcgatccatcgccattgctgatgaagagaagaataaaataatttggtgcagAACGCGAACTCGAACCAGAGCAACATGCTGATACTGCAGGAGTGCTGCACGGACGCGACGGGGTCGTACGTGATATACGCGCCGGTGGACGTGGTGGCGA
species | Oryza sativa |
transcript | LOC_Os08g04190.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGCCAATGGCCGCGAGCACGGCAACGCCGTCTCCCTCCTCCGCGTCAAC AACGCGAACTCGAACCAGAGCAACATGCTGATACTGCAGGAGTGCTGCACGEST: gi|58658778|gb|CK047458.1|CK047458
genomic: TCGCCAATGGCCGCGACCACGGCAACGCCGTCTCCCTCCTCCGCGTCAACgtaagatagc ... tttggtgcagAACGCGAACTCGAACCAGAGCAACATGCTGATACTGCAGGAGTGCTGCACG
EST: TCGCCAATGGCCGCGACCACGGCAACGCCGTCTCCCTCCTCCGCGTCAAC AACGCGAACTCGAACCAGAGCAACATGCTGATACTGCAGGAGTGCTGCACGEST: gi|58682777|gb|CK071464.1|CK071464
genomic: TCGCCAATGGCCGCGACCACGGCAACGCCGTCTCCCTCCTCCGCGTCAACgtaagatagc ... tttggtgcagAACGCGAACTCGAACCAGAGCAACATGCTGATACTGCAGGAGTGCTGCACG
EST: TCGCCAATGGCCGCGACCACGGCAACGCCGTCTCCCTCCTCCGCGTCAAC AACGCGAACTCGAACCAGAGCAACATGCTGATACTGCAGGAGTGCTGCACGEST: gi|44673885|gb|CR287319.1|CR287319
genomic: TCGCCAATGGCCGCGACCACGGCAACGCCGTCTCCCTCCTCCGCGTCAACgtaagatagc ... tttggtgcagAACGCGAACTCGAACCAGAGCAACATGCTGATACTGCAGGAGTGCTGCACG
EST: TCGCCAATGGCCGCGACCACGGCAACGCCGTCTCCCTCCTCCGCGTCAAC AACGCGAACTCGAACCAGAGCAACATGCTGATACTGCAGGAGTACTGCACG
genomic: TCGCCAATGGCCGCGACCACGGCAACGCCGTCTCCCTCCTCCGCGTCAACgtaagatagc ... tttggtgcagAACGCGAACTCGAACCAGAGCAACATGCTGATACTGCAGGAGTGCTGCACG
tgaatcgatccatcgccattgctgatgaagagaagaataaaataatttggtgcagAACGCGAACTCGAACCAGAGCAACATGCTGATACTGCAGGAGTGCTGCACGGACGCGACGGGGTCGTACGTGATATACGCGCCGGTGGACGTGGTGGCGA
tgctgat putative branch site (score: 2)
aagagaagaataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatagctcttcttcctataaaatggatgatgaatcgatccatcgccattgctgatgaagagaagaataaaataatttggtgcagAACGCGAACTCGAACCAGAGCAACATGCTGATACTGCAGGAGTGCTGCACGGACGCGACGGGGTCGTACGTGATATACGCGCCGGTGGACGTGGTGGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG