1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...tgcactagtgagttgctttatgatcacacacctttgcactgattttctaatttgtaagtaattctgcatgatgctaatattgagcccttttacatatcagGAAAGCCAATTATCTCACCAGCTTCCACCAAAAGAGTTGGACCTTTGGTTAGACCTACTACACCAAGATCCCCTGTTCCTACTGTCAGTGCATTTGAAAC
species | Oryza sativa |
transcript | LOC_Os07g49270.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACCCTTCCCATCCCACCGGGCCTTCCGCCACTTCACATCGGCCGAGAAG GAAAGCCAATTATCTCACCAGCTTCCACCAAAAGAGTTGGACCTTTGGTTAEST: gi|88386809|gb|CI629136.1|CI629136
genomic: CACCCTTCCCATCCCACCGGGCCTTCCGCCACTTCACACCGGCCGAGAAGgtacccccac ... tacatatcagGAAAGCCAATTATCTCACCAGCTTCCACCAAAAGAGTTGGACCTTTGGTTA
EST: CACCCTTCCCATCCCACCGGGCCTTNCGCCACTTCACACCGGCCGAGAAG GAAAGCCAATTATCTCACCAGCTTCCACCAAAAGAGTTGGACCTTEST: gi|33679186|gb|CF307425.1|CF307425
genomic: CACCCTTCCCATCCCACCGGGCCTTCCGCCACTTCACACCGGCCGAGAAGgtacccccac ... tacatatcagGAAAGCCAATTATCTCACCAGCTTCCACCAAAAGAGTTGGACCTT
EST: CACCCTTCCCATCCCACCGGGCCTTCCGCCACTTCACACCGGCCGAGAAG GAAAGCCAATTATCTCACCAGCTTCCACCAAAAGAGTTGGACCTTTGGTTA
genomic: CACCCTTCCCATCCCACCGGGCCTTCCGCCACTTCACACCGGCCGAGAAGgtacccccac ... tacatatcagGAAAGCCAATTATCTCACCAGCTTCCACCAAAAGAGTTGGACCTTTGGTTA
tctaatttgtaagtaattctgcatgatgctaatattgagcccttttacatatcagGAAAGCCAATTATCTCACCAGCTTCCACCAAAAGAGTTGGACCTTTGGTTAGACCTACTACACCAAGATCCCCTGTTCCTACTGTCAGTGCATTTGAAAC
tgctaat putative branch site (score: 13)
cccttttac putative PPT
ttttacatat TA-rich tract