1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgctgctatttaaacaattaagcttgatgttctaaccccgcttatttcaggctaatttttctgactacttgttgcattttagGCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGACGTGCTCGATGATTCAAATGTTAAGAAAGACGAGAAGTTTGCTACAATAG
species | Oryza sativa |
transcript | LOC_Os07g46660.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCCTTTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAG GCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGACEST: gi|58670217|gb|CK058903.1|CK058903
genomic: GGCCTTTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAGgtgctgctat ... tgcattttagGCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGAC
EST: GGCCTTTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAG GCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGACEST: gi|56157361|gb|D47215.2|D47215
genomic: GGCCTTTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAGgtgctgctat ... tgcattttagGCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGAC
EST: GGCCTTTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAG GCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGACEST: gi|66919105|gb|CX105953.1|CX105953
genomic: GGCCTTTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAGgtgctgctat ... tgcattttagGCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGAC
EST: GAGGAA-CAGAATATACCTAAG GCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGACEST: gi|25798247|gb|CA754208.1|CA754208
genomic: GAGGAACCAGAATATACCTAAGgtgctgctat ... tgcattttagGCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGAC
EST: GGCCTTTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAG GCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGACEST: gi|29682219|gb|CB678494.1|CB678494
genomic: GGCCTTTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAGgtgctgctat ... tgcattttagGCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGAC
EST: GGCCTTTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAG GCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGACEST: gi|33793582|gb|CF322675.1|CF322675
genomic: GGCCTTTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAGgtgctgctat ... tgcattttagGCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGAC
EST: GGCCTTTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAG GCTGGTTACCCAACACTGAATGCATTTANTTGAGTTCATCTCTCAATTCGAEST: gi|58655563|gb|CK044243.1|CK044243
genomic: GGCCTTTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAGgtgctgctat ... tgcattttagGCTGGTTACCCAACACTGAATGCATTTA-TTGAGTTCATCTCTCAATTCGA
EST: GCCTGGTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAG GCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGACEST: gi|33794187|gb|CF322984.1|CF322984
genomic: GCCT-TTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAGgtgctgctat ... tgcattttagGCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGAC
EST: GGCCTTTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAG GCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGACEST: gi|4715803|gb|AU056919.1|AU056919
genomic: GGCCTTTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAGgtgctgctat ... tgcattttagGCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGAC
EST: GGCCTTTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAG GCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGAC
genomic: GGCCTTTTGTCCAGCTTTTACAGAACTTGAGGAACCAGAATATACCTAAGgtgctgctat ... tgcattttagGCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGAC
tgttctaaccccgcttatttcaggctaatttttctgactacttgttgcattttagGCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGACGTGCTCGATGATTCAAATGTTAAGAAAGACGAGAAGTTTGCTACAATAG
taatttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctgctatttaaacaattaagcttgatgttctaaccccgcttatttcaggctaatttttctgactacttgttgcattttagGCTGGTTACCCAACACTGAATGCATTTATTGAGTTCATCTCTCAATTCGACGTGCTCGATGATTCAAATGTTAAGAAAGACGAGAAGTTTGCTACAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT