1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gcatgtggcgcatgagttctgcaactgctctgcctgttagatggagcactaatgtcttgatagatttgtgtaaatgtgatgatttggtgttttctcgcagCTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTCGGCTGATGTCAACAAGCAGCTAAATGATAAGAAGCAGCTGATG
species | Oryza sativa |
transcript | LOC_Os07g44350.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCG CTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTCEST: gi|88307564|gb|CI643413.1|CI643413
genomic: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCGgtaggtctcc ... tttctcgcagCTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTC
EST: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCG CTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTCEST: gi|88718251|gb|CI741340.1|CI741340
genomic: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCGgtaggtctcc ... tttctcgcagCTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTC
EST: CCGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCG CTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTCEST: gi|569629|gb|D40478.1|D40478
genomic: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCGgtaggtctcc ... tttctcgcagCTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTC
EST: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCG CTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTCEST: gi|88311877|gb|CI577483.1|CI577483
genomic: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCGgtaggtctcc ... tttctcgcagCTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTC
EST: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCG CTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTCEST: gi|88741079|gb|CI764587.1|CI764587
genomic: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCGgtaggtctcc ... tttctcgcagCTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTC
EST: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCG CTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTCEST: gi|1631762|gb|C19491.1|C19491
genomic: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCGgtaggtctcc ... tttctcgcagCTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTC
EST: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCG CTTAATCAAAGAATTTGATCGNATTCTCAAAGEST: gi|58596898|gb|CK007426.1|CK007426
genomic: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCGgtaggtctcc ... tttctcgcagCTTAATCAAAGAATTTGATCGTATTCTCAAAG
EST: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCG CTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTCEST: gi|88402802|gb|CI613250.1|CI613250
genomic: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCGgtaggtctcc ... tttctcgcagCTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTC
EST: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCG CTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTC
genomic: CAGTCCAAGCAGCTGGAAGATCTCACCGGGAAGATGAGGGAGTGCAAGCGgtaggtctcc ... tttctcgcagCTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTC
gcactaatgtcttgatagatttgtgtaaatgtgatgatttggtgttttctcgcagCTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTCGGCTGATGTCAACAAGCAGCTAAATGATAAGAAGCAGCTGATG
tgttttctc CT-rich tract
atagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgtggcgcatgagttctgcaactgctctgcctgttagatggagcactaatgtcttgatagatttgtgtaaatgtgatgatttggtgttttctcgcagCTTAATCAAAGAATTTGATCGTATTCTCAAAGAGGATGAGAAAAAGAACTCGGCTGATGTCAACAAGCAGCTAAATGATAAGAAGCAGCTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
gcatgtg
- - - -gcgcatg
- - - - - - - - ttctgca
- - - - - - - - - - - - - - -ctgcctg
- - - - - - - - - - - - - - - - - - - - -tggagca
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttggtg