1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcacatattcttgctactagaacctgtgtactttttgtttagtttaatctgccacttctacaaattattgtctttttcctaactgttttcctcttatcagGCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGTGGTGGTGGCGGTGCTGGCGAGGGATTTGATGTGACAAAAAGTGGAGATG
species | Oryza sativa |
transcript | LOC_Os07g43470.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAG GCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGTEST: gi|88403519|gb|CI575403.1|CI575403
genomic: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAGgtaatgtgaa ... ctcttatcagGCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGT
EST: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAG GCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGTEST: gi|88382980|gb|CI683078.1|CI683078
genomic: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAGgtaatgtgaa ... ctcttatcagGCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGT
EST: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAG GCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGTEST: gi|27410184|gb|CA923254.1|CA923254
genomic: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAGgtaatgtgaa ... ctcttatcagGCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGT
EST: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAG GCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGTEST: gi|9865251|gb|AU101001.1|AU101001
genomic: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAGgtaatgtgaa ... ctcttatcagGCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGT
EST: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAG GCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGTEST: gi|88299221|gb|CI570191.1|CI570191
genomic: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAGgtaatgtgaa ... ctcttatcagGCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGT
EST: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAG GCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGTEST: gi|88724458|gb|CI747717.1|CI747717
genomic: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAGgtaatgtgaa ... ctcttatcagGCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGT
EST: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAG GCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGTEST: gi|9865250|gb|AU101000.1|AU101000
genomic: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAGgtaatgtgaa ... ctcttatcagGCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGT
EST: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAG GCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGTEST: gi|88332618|gb|CI651778.1|CI651778
genomic: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAGgtaatgtgaa ... ctcttatcagGCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGT
EST: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAG GCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGT
genomic: CAAGGACGCAGAAGAACAAGGCCACTGCACACCATCTTGGTCTTCTGAAGgtaatgtgaa ... ctcttatcagGCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGT
aatctgccacttctacaaattattgtctttttcctaactgttttcctcttatcagGCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGTGGTGGTGGCGGTGCTGGCGAGGGATTTGATGTGACAAAAAGTGGAGATG
tcctaac putative branch site (score: 64)
ttgtctttttcctaac CT-rich tract
aaattattgtcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacatattcttgctactagaacctgtgtactttttgtttagtttaatctgccacttctacaaattattgtctttttcctaactgttttcctcttatcagGCTAAACTTGCAAAATTACGCCGTGAGTTGCTGACTCCTACATCCAAAGGTGGTGGTGGCGGTGCTGGCGAGGGATTTGATGTGACAAAAAGTGGAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - -tgctact
- - - - - - - - - -gaacctg
- - - - - - - - - - - - - - - - - - - - - - - -tctgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacaaa