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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttgagcctctaaaaggggtcctttgtgggtgacaaactacttaaacttattatctgacattgttcctgaatcctctgcagAAAATTATCCGGCATGGGGATCAACGGGACTTTGGGCTACAACATGAATCTACTGACTTCACTAGTTGAACT

Basic information

species Oryza sativa
transcript LOC_Os07g42626.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86904545|gb|CI308755.1|CI308755
EST:     GGACAGTCCTGGCTTGGGATCACTTGCTCGGGTTCCAGGGTGACAGCAAT                         AAAATTATCCGGCATGGGGATCAACGGGACTTTGGGCTACAACATGAATCT
genomic: GGACAGTCCTGGCTTGGGATCACTTGCTCGGGTTCCAGGGTGACAGCAATgtgagtttga ... tcctctgcagAAAATTATCCGGCATGGGGATCAACGGGACTTTGGGCTACAACATGAATCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggtgacaaactacttaaacttattatctgacattgttcctgaatcctctgcagAAAATTATCCGGCATGGGGATCAACGGGACTTTGGGCTACAACATGAATCTACTGACTTCACTAGTTGAACT
                          atctgac  putative branch site (score: 3)
                                             tcctctgc  putative PPT
            tacttaaacttattat  TA-rich tract