Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgatcagtgtccactgtccaccttattttctgaattgccatttatgttcactggacttaaacccttcaattatctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGCGCCCTCTTCAAGCTATACCAATGTTGCTAGGTGGTTTACTCACATTGAT

Basic information

species Oryza sativa
transcript LOC_Os07g42300.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8857934|gb|AU095252.1|AU095252
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218488272|gb|FG957711.1|FG957711
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218504669|gb|FG959569.1|FG959569
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|163919727|gb|EG711657.1|EG711657
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218484393|gb|FG946270.1|FG946270
EST:     TCGATGAGTACCTTCTCACTCGCAGCTACATCNTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTG
genomic: TCGATGAGTACCTTCTCACTCGCAGCTACATC-TCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTG
EST: gi|33793828|gb|CF322802.1|CF322802
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAATGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|33680932|gb|CF309171.1|CF309171
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAATGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|55410327|gb|CV722703.1|CV722703
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAATGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218486383|gb|FG949948.1|FG949948
EST:     GGCCACAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218487740|gb|FG962547.1|FG962547
EST:     GGCCACAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|58585610|gb|CF983918.1|CF983918
EST:     GGCCACAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|33679175|gb|CF307414.1|CF307414
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAATGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218490120|gb|FG959263.1|FG959263
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218500832|gb|FG957607.1|FG957607
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|58604129|gb|CK014657.1|CK014657
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|58585628|gb|CF983936.1|CF983936
EST:     GGCCACAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218497055|gb|FG946052.1|FG946052
EST:     GGCCACAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218487487|gb|FG950696.1|FG950696
EST:     GGCCACAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|58610571|gb|CK038283.1|CK038283
EST:     GGCCACAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|88350619|gb|CI631342.1|CI631342
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218481608|gb|FG958672.1|FG958672
EST:     CTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: CTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|88352964|gb|CI630142.1|CI630142
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218479613|gb|FG956760.1|FG956760
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218481300|gb|FG969692.1|FG969692
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|58685071|gb|CK073758.1|CK073758
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|58596563|gb|CK007091.1|CK007091
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACGCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|58676446|gb|CK065133.1|CK065133
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|88345100|gb|CI628354.1|CI628354
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|163927663|gb|EG710491.1|EG710491
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|88732884|gb|CI756061.1|CI756061
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCANTCGCAGCCACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|58680576|gb|CK069263.1|CK069263
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|286985|gb|D15791.1|D15791
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218499366|gb|FG951061.1|FG951061
EST:     GGCCACAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218494827|gb|FG945588.1|FG945588
EST:     GGCCACAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|33793482|gb|CF322624.1|CF322624
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAATGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218502427|gb|FG965006.1|FG965006
EST:     GGCCACAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|58687056|gb|CK075743.1|CK075743
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|33659429|gb|CF282042.1|CF282042
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAATGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|163917984|gb|EG713974.1|EG713974
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|58598400|gb|CK008928.1|CK008928
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|38478961|gb|CF963094.1|CF963094
EST:     CAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCGGTGTACTCTGCATTTTCAACTGC
genomic: CAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|58603875|gb|CK014403.1|CK014403
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|33806188|gb|CF328974.1|CF328974
EST:     GGCCTCAAAAAGCTCGATGATTTCCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAATGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218479067|gb|FG962848.1|FG962848
EST:     GGCCTCAAAAAGCTTGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCA-TTTCGACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|29645213|gb|CB650220.1|CB650220
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218485855|gb|FG956449.1|FG956449
EST:     TCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: TCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|33655216|gb|CF277830.1|CF277830
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAATGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218501608|gb|FG970643.1|FG970643
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218494225|gb|FG955538.1|FG955538
EST:     GGCCTCAAAAAGCTC-ATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|58691095|gb|CK079782.1|CK079782
EST:     GGCCACAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|218480235|gb|FG947338.1|FG947338
EST:     GGCCACAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|58609286|gb|CK037319.1|CK037319
EST:     GGCCACAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTGGGAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|88312714|gb|CI587622.1|CI587622
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
EST: gi|88360243|gb|CI611962.1|CI611962
EST:     GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGG                         GTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC
genomic: GGCCTCAAAAAGCTCGATGAGTACCTTCTCACTCGCAGCTACATCTCTGGgtatatgatc ... ctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgaattgccatttatgttcactggacttaaacccttcaattatctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGCGCCCTCTTCAAGCTATACCAATGTTGCTAGGTGGTTTACTCACATTGAT
                                            tctgtttcc  CT-rich tract
           atttatgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatatgatcagtgtccactgtccaccttattttctgaattgccatttatgttcactggacttaaacccttcaattatctgtttccagGTACCAAGCCTCCAACGATGACTTGGCTGTGTACTCTGCATTTTCAACTGCGCCCTCTTCAAGCTATACCAATGTTGCTAGGTGGTTTACTCACATTGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT