1 5' 3' | 2 5' 3' | 3 5' 3' |
...cgattaattaattataatgatgacatgcgcggctttagctgacgttgatcctgctgagatttctgaagatattttcttttcttttcttctttttctgcagAGATTCCTGCAGTGCTGCCGTGGTCGACCCGATTAAACATCGCGGTTGGCGCCGCGAAGGGTTTGGCGTTCCTCCACGACGCAGAGAAGCCGGTCATCTA
species | Oryza sativa |
transcript | LOC_Os07g42200.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCTACGAGTACATAGGAGCATGGCAGCCTCGAGAACCACCTCTTCAAAC AGATTCCTGCAGTGCTGCCGTGGTCGACCCGATTAAACATCGCGGTAGGCG
genomic: GTCTACGAGTACAT-GGAGCATGGCAGCCTCGAGAACCACCTCTTCAAACgtaagcactg ... ttttctgcagAGATTCCTGCAGTGCTGCCGTGGTCGACCCGATTAAACATCGCGGTTGGCG
tgatcctgctgagatttctgaagatattttcttttcttttcttctttttctgcagAGATTCCTGCAGTGCTGCCGTGGTCGACCCGATTAAACATCGCGGTTGGCGCCGCGAAGGGTTTGGCGTTCCTCCACGACGCAGAGAAGCCGGTCATCTA
cgttgat putative branch site (score: 10)
tattttcttttctttt putative PPT
atattttcttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgattaattaattataatgatgacatgcgcggctttagctgacgttgatcctgctgagatttctgaagatattttcttttcttttcttctttttctgcagAGATTCCTGCAGTGCTGCCGTGGTCGACCCGATTAAACATCGCGGTTGGCGCCGCGAAGGGTTTGGCGTTCCTCCACGACGCAGAGAAGCCGGTCATCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - atgatga
- - - - - - - - - - - -catgcgc
- - - - - - - - - - - - - - - - - - -gctgacg
- - - - - - - - - - - - - - - - - - - - - - - - -cctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctga