1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgcaattacttgtaactttgcatacagtttgttctcatctttattagcgttttgattttttttatattgttaggggaaagCCTGTAGCTCGGACATTATGTGGTCTGGTTCGTCCTGGACTTGTGGCAAGCAGCTTTACCACTATAAAGCTTTTTGTCGTAATGGTACCACAATATCT
species | Oryza sativa |
transcript | LOC_Os07g41640.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGATTGGATGGATACAGTGAACCTGATAGCTTTATGGGTCACAATCTG CCTGTAGCTCGGACATTATGTGGTCTGGTTCGTCCTGGACTTGTGGCAAGCEST: gi|58690257|gb|CK078944.1|CK078944
genomic: TTGGATTGGATGGATACAGTGAACCTGATAGCTTTATGGGTCACAATCTGgtatgcaatt ... taggggaaagCCTGTAGCTCGGACATTATGTGGTCTGGTTCGTCCTGGACTTGTGGCAAGC
EST: TTGGATTGGATGGATACAGTGAACCTGATAGCTTTATGGGTCACAATCTGGGGAAAGEST: gi|29629598|gb|CB634607.1|CB634607
genomic: TTGGATTGGATGGATACAGTGAACCTGATAGCTTTATGGGTCACAATCT-------Ggtatgcaatt ... tagg
EST: TTGGATTGGATGGATACAGTGAACCTGATAGCTTTATGGGTCACAATCTGGGGAAAGEST: gi|86502082|gb|CI144715.1|CI144715
genomic: TTGGATTGGATGGATACAGTGAACCTGATAGCTTTATGGGTCACAATCT-------Ggtatgcaatt ... tagg
EST: TTGGATTGGATGGATACAGTGAACCTGATAGCTTTATGGGTCACAATCTGGGGAAAGEST: gi|29617373|gb|CB622385.1|CB622385
genomic: TTGGATTGGATGGATACAGTGAACCTGATAGCTTTATGGGTCACAATCT-------Ggtatgcaatt ... tagg
EST: TTGGATTGGATGGATACAGTGAACCTGATAGCTTTATGGGTCACAATCTGGGGAAAG
genomic: TTGGATTGGATGGATACAGTGAACCTGATAGCTTTATGGGTCACAATCT-------Ggtatgcaatt ... tagg
agtttgttctcatctttattagcgttttgattttttttatattgttaggggaaagCCTGTAGCTCGGACATTATGTGGTCTGGTTCGTCCTGGACTTGTGGCAAGCAGCTTTACCACTATAAAGCTTTTTGTCGTAATGGTACCACAATATCT
ttttgat putative branch site (score: 4)
tttattagcgttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaattacttgtaactttgcatacagtttgttctcatctttattagcgttttgattttttttatattgttaggggaaagCCTGTAGCTCGGACATTATGTGGTCTGGTTCGTCCTGGACTTGTGGCAAGCAGCTTTACCACTATAAAGCTTTTTGTCGTAATGGTACCACAATATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT