1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taccttgttttggaacgcgaaattttgcagatcgaataagctgttttcgatctactcaatcacattgcggtgtttatgctgacgtctggccttctgtcagAATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAGGAGCCACAGGTTAAAACTAAACAATCTGGCTGGAGAGCACCATCAATCA
species | Oryza sativa |
transcript | LOC_Os07g41250.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAG AATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAGEST: gi|29630973|gb|CB635982.1|CB635982
genomic: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAGgtacggcgaa ... cttctgtcagAATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAG
EST: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAG AATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAGEST: gi|88734444|gb|CI757952.1|CI757952
genomic: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAGgtacggcgaa ... cttctgtcagAATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAG
EST: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAG AATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAGEST: gi|88392649|gb|CI625471.1|CI625471
genomic: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAGgtacggcgaa ... cttctgtcagAATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAG
EST: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAG AATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTCGGAAGAACAEST: gi|58663030|gb|CK051716.1|CK051716
genomic: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAGgtacggcgaa ... cttctgtcagAATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATT-GGAAGAACA
EST: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAG AATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAGEST: gi|88693282|gb|CI736857.1|CI736857
genomic: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAGgtacggcgaa ... cttctgtcagAATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAG
EST: CCATGGACGAGGCCGCCGCCGGCCAATGCGCCAGTCCTCTTCTTGCCAAG AATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAGEST: gi|88359141|gb|CI679660.1|CI679660
genomic: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAGgtacggcgaa ... cttctgtcagAATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAG
EST: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAG AATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAGEST: gi|29675958|gb|CB672233.1|CB672233
genomic: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAGgtacggcgaa ... cttctgtcagAATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAG
EST: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAG AATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAGEST: gi|88421183|gb|CI567024.1|CI567024
genomic: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAGgtacggcgaa ... cttctgtcagAATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAG
EST: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAG AATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAGEST: gi|88411056|gb|CI606275.1|CI606275
genomic: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAGgtacggcgaa ... cttctgtcagAATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAG
EST: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAG AATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAGEST: gi|88725407|gb|CI748666.1|CI748666
genomic: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAGgtacggcgaa ... cttctgtcagAATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAG
EST: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAG AATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAG
genomic: CCATGGACGAGGCCGCCGCCGGCCAACGCGCCAGTCCTCTTCTTGCCAAGgtacggcgaa ... cttctgtcagAATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAG
ttcgatctactcaatcacattgcggtgtttatgctgacgtctggccttctgtcagAATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAGGAGCCACAGGTTAAAACTAAACAATCTGGCTGGAGAGCACCATCAATCA
tgctgac putative branch site (score: 12)
ccttctgtc putative PPT
tgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taccttgttttggaacgcgaaattttgcagatcgaataagctgttttcgatctactcaatcacattgcggtgtttatgctgacgtctggccttctgtcagAATGATGGATCAAGCTATGGTGAAGAATCACAGAGTTTATTGGAAGAACAGGAGCCACAGGTTAAAACTAAACAATCTGGCTGGAGAGCACCATCAATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - -tgttttg
- - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgac