1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tactttttttccgctctgtattgcattgaaagatgctttatcatttactgatctaagtaatacagttcaaggaataactatgctcgtaatggatctgtagGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCAATGAACTTAT
species | Oryza sativa |
transcript | LOC_Os07g40700.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCG GTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCEST: gi|58676447|gb|CK065134.1|CK065134
genomic: TAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCGgtaatttgtt ... ggatctgtagGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGC
EST: TAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCG GTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCEST: gi|29661428|gb|CB657703.1|CB657703
genomic: TAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCGgtaatttgtt ... ggatctgtagGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGC
EST: TAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCG GTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCEST: gi|33674842|gb|CF303081.1|CF303081
genomic: TAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCGgtaatttgtt ... ggatctgtagGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGC
EST: TAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCG GTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGC
genomic: TAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCGgtaatttgtt ... ggatctgtagGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGC
tactgatctaagtaatacagttcaaggaataactatgctcgtaatggatctgtagGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCAATGAACTTAT
gaataac putative branch site (score: 5)
taagtaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactttttttccgctctgtattgcattgaaagatgctttatcatttactgatctaagtaatacagttcaaggaataactatgctcgtaatggatctgtagGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCAATGAACTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - ttccgct
- - - - - - - - - - -tgcattg
- - - - - - - - - - - - - - - agatgct
- - - - - - - - - - - - - - - - - - - - - - ttactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgctc