1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgcaactttattttgtttttggtggattgcgatggtactggtgatacatgtactgttcttattgctactgtttagatggctaacttattttaatggatatatcttgcagACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTCTCCTCAAAAATAGTTGCATCTGAGTATCTAGAAGCAAATAAAGATCTTT
species | Oryza sativa |
transcript | LOC_Os07g39630.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAACACTTTACGGCTTCTAATTATTTGTCTTCCGAAATTGAACTTAGAG ACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTCEST: gi|58695257|gb|CK083944.1|CK083944
genomic: AGAACACTTTACGGCTTCTAATTATTTGTCTTCCGAAATTGAACTTAGAGgtatgcaact ... tatcttgcagACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTC
EST: AGAACACTTTACGGCTTCTAATTATTTGTCTTCCGAAATTGAACTTAGAG ACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTCEST: gi|58654938|gb|CK043618.1|CK043618
genomic: AGAACACTTTACGGCTTCTAATTATTTGTCTTCCGAAATTGAACTTAGAGgtatgcaact ... tatcttgcagACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTC
EST: AGAACACTTTACGGCTTCTAATTATTTGTCTTCCGAAATTGAACTTAGAG ACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTCEST: gi|66915714|gb|CX102562.1|CX102562
genomic: AGAACACTTTACGGCTTCTAATTATTTGTCTTCCGAAATTGAACTTAGAGgtatgcaact ... tatcttgcagACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTC
EST: AGAACACTTTACGGCTTCTAATTATTTGTCTTCCGAAATTGAACTTAGAG ACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTCEST: gi|58674983|gb|CK063670.1|CK063670
genomic: AGAACACTTTACGGCTTCTAATTATTTGTCTTCCGAAATTGAACTTAGAGgtatgcaact ... tatcttgcagACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTC
EST: AGAACACTTTACGGCTTCTAATTATTTGTCTTCCGAAATTGAACTTAGAG ACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTCEST: gi|29629034|gb|CB634045.1|CB634045
genomic: AGAACACTTTACGGCTTCTAATTATTTGTCTTCCGAAATTGAACTTAGAGgtatgcaact ... tatcttgcagACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTC
EST: AGAACACTTTACGGCTTCTAATTATTTGTCTTCCGAAATTGAACTTAGAG ACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTCEST: gi|218480403|gb|FG949018.1|FG949018
genomic: AGAACACTTTACGGCTTCTAATTATTTGTCTTCCGAAATTGAACTTAGAGgtatgcaact ... tatcttgcagACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTC
EST: AGAACACTTTACGGCTTCTAATTATTTGTCTTCCGAAATTGAACTTAGAG ACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTC
genomic: AGAACACTTTACGGCTTCTAATTATTTGTCTTCCGAAATTGAACTTAGAGgtatgcaact ... tatcttgcagACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTC
gttcttattgctactgtttagatggctaacttattttaatggatatatcttgcagACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTCTCCTCAAAAATAGTTGCATCTGAGTATCTAGAAGCAAATAAAGATCTTT
taacttattttaatgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaactttattttgtttttggtggattgcgatggtactggtgatacatgtactgttcttattgctactgtttagatggctaacttattttaatggatatatcttgcagACCAGGAAAGATGCAACTCAAGTTGTTGCAAACTTGCAAAGGCAGCAAGTCTCCTCAAAAATAGTTGCATCTGAGTATCTAGAAGCAAATAAAGATCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA