1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagataattcttcttgttcttgttcttcatcttgttcgttttgctcggcggcttctcgcctgacgcgaggggtggtggtgtgcagGTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGTGAAGCTGCACGACTTCCTGCAGAGCCCAGAGGACCTGGAGCGGCTCTAC
species | Oryza sativa |
transcript | LOC_Os07g38530.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACAACGACGTTCTTGGCAAGGGCGCGTCCAAGACCGT GTACAGGGCGTTCGACGAGGTGCCAGGGGATGGAGGTGGCGTGGAACCAGGEST: gi|88394443|gb|CI605784.1|CI605784
genomic: TACAACGACGTTCTTGGCAAGGGCGCGTCCAAGACCGTgtaagataat ... tggtgtgcagGTACAGGGCGTTCGACGA-GTACCAGGGGATGGAGGTGGCGTGGAACCAGG
EST: TACAACGACGTTCTTGGCAAGGGCGCGTCCAAGACCGT GTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGTEST: gi|58658300|gb|CK046980.1|CK046980
genomic: TACAACGACGTTCTTGGCAAGGGCGCGTCCAAGACCGTgtaagataat ... tggtgtgcagGTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGT
EST: TACAACGACGTTCTTGGCAAGGGCGCGTCCAAGACCGT GTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGTEST: gi|29629432|gb|CB634441.1|CB634441
genomic: TACAACGACGTTCTTGGCAAGGGCGCGTCCAAGACCGTgtaagataat ... tggtgtgcagGTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGT
EST: TACAACGACGTTCTTGGCAAGGGCGCGTCCAAGACCGT GTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGTEST: gi|29622036|gb|CB627047.1|CB627047
genomic: TACAACGACGTTCTTGGCAAGGGCGCGTCCAAGACCGTgtaagataat ... tggtgtgcagGTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGT
EST: TACAACGACGTTCTTGGCAAGGGCGCGTCCAAGACCGT GTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGTEST: gi|88583784|gb|CI701291.1|CI701291
genomic: TACAACGACGTTCTTGGCAAGGGCGCGTCCAAGACCGTgtaagataat ... tggtgtgcagGTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGT
EST: TACAACGACGTTCTTGGCAAGGGCGCGTCCAAGACCGT GTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGTEST: gi|29629006|gb|CB634017.1|CB634017
genomic: TACAACGACGTTCTTGGCAAGGGCGCGTCCAAGACCGTgtaagataat ... tggtgtgcagGTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGT
EST: TACAACGACGTTCTTGGCAAGGGCGCGTCCAAGACCGT GTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGTEST: gi|88423128|gb|CI613429.1|CI613429
genomic: TACAACGACGTTCTTGGCAAGGGCGCGTCCAAGACCGTgtaagataat ... tggtgtgcagGTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGT
EST: TACAACGACGTTCTTGGCAAGGGCGCGTCCAAGACCGT GTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGT
genomic: TACAACGACGTTCTTGGCAAGGGCGCGTCCAAGACCGTgtaagataat ... tggtgtgcagGTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGT
cttgttcgttttgctcggcggcttctcgcctgacgcgaggggtggtggtgtgcagGTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGTGAAGCTGCACGACTTCCTGCAGAGCCCAGAGGACCTGGAGCGGCTCTAC
gcctgac putative branch site (score: 9)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagataattcttcttgttcttgttcttcatcttgttcgttttgctcggcggcttctcgcctgacgcgaggggtggtggtgtgcagGTACAGGGCGTTCGACGAGTACCAGGGGATGGAGGTGGCGTGGAACCAGGTGAAGCTGCACGACTTCCTGCAGAGCCCAGAGGACCTGGAGCGGCTCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA