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gtataacctgcgaatggcctaatttattctaccctttcatatactatgttacaaaactagtgttcaagggttctgaactttgagaatgttgtgttttgcagCTGAGGAATCCTACCCACCCAAACTGTTCTGTTCCTACTGCTATGCATTGTCTTGCCACTTTGCTAAGAGAGCAGTATGTTAGAGCTTTATTTGTTCAGG
species | Oryza sativa |
transcript | LOC_Os07g36470.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATCTACTCAAGATGTGTTAAGAGGTTTGGTTGATTGGCTCTGTTCTCAG CTGAGGAATCCTACCCACCCAAACTGTTCTGTTCCTACTGCTATGCATTGTEST: gi|58691898|gb|CK080585.1|CK080585
genomic: CATCTACTCAAGATGTGTTAAGAGGTTTGGTTGATTGGCTCTGTTCTCAGgtataacctg ... tgttttgcagCTGAGGAATCCTACCCACCCAAACTGTTCTGTTCCTACTGCTATGCATTGT
EST: CATCTACTCAAGATGTGTTAAGAGGTTTGGTTGATTGGCTCTGTTCTCAG CTGAGGAATCCTACCCACCCAAACTGTTCTGTTCCTACTGCTATGCATTGTEST: gi|58682821|gb|CK071508.1|CK071508
genomic: CATCTACTCAAGATGTGTTAAGAGGTTTGGTTGATTGGCTCTGTTCTCAGgtataacctg ... tgttttgcagCTGAGGAATCCTACCCACCCAAACTGTTCTGTTCCTACTGCTATGCATTGT
EST: CATCTACTCAAGATGTGTTAAGAGGTTTGGTTGATTGGCTCTGTTCTCAG CTGAGGAATCCTACCCACCCAAACTGTGCTGTTCCTACTGCTATGCATTGTEST: gi|58687201|gb|CK075888.1|CK075888
genomic: CATCTACTCAAGATGTGTTAAGAGGTTTGGTTGATTGGCTCTGTTCTCAGgtataacctg ... tgttttgcagCTGAGGAATCCTACCCACCCAAACTGTTCTGTTCCTACTGCTATGCATTGT
EST: CATCTACTCAAGATGTGTTAAGA-GTTTGGTTGATTGGCTCTGTTCTCAG CTGAGGAATCCTACCCACCCAAACTGTTCTGTTCCTACTGCTATGCATTGT
genomic: CATCTACTCAAGATGTGTTAAGAGGTTTGGTTGATTGGCTCTGTTCTCAGgtataacctg ... tgttttgcagCTGAGGAATCCTACCCACCCAAACTGTTCTGTTCCTACTGCTATGCATTGT
tgttacaaaactagtgttcaagggttctgaactttgagaatgttgtgttttgcagCTGAGGAATCCTACCCACCCAAACTGTTCTGTTCCTACTGCTATGCATTGTCTTGCCACTTTGCTAAGAGAGCAGTATGTTAGAGCTTTATTTGTTCAGG
aaaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataacctgcgaatggcctaatttattctaccctttcatatactatgttacaaaactagtgttcaagggttctgaactttgagaatgttgtgttttgcagCTGAGGAATCCTACCCACCCAAACTGTTCTGTTCCTACTGCTATGCATTGTCTTGCCACTTTGCTAAGAGAGCAGTATGTTAGAGCTTTATTTGTTCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT