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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcaatgtgcactttttgtctttgtactctatgttttggtggttataatctagattataatagctaggagctatgtactgaacctgattttgttcttagGAAAACCGTCTGCGTCAAGAAATAGAAGATCTTGAGAAAGATACAGGATACAAGTTGAGAGTTCTTGCACAAAATTATCCTGATACACCAG

Basic information

species Oryza sativa
transcript LOC_Os07g34950.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g34950.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G022876_T01 (Zea mays), 3'ss of exon 2
tttcaatgtgcactttttgtctttgtactctatgttttggtggttataatctagattataatagctaggagctatgtactgaacctgat-tttgttcttagGAAAACCGTCTGCGTCAAGAAATAGAAGATCTTGAGAAAGATACAGGATACAAGTTGAGAGTTCTTGCACAAAATTATCCTGATACACCAG
     | |   |||||   |  |||   | | |||| |    |  ||   ||   |  |  |||| |      |   |  ||    | | |||||||||||||||||||| |||| ||||| |||||||| || |||||||||||||| |||||  || ||||||||||||||||||||||||||||||| |
-ggagaggaatactttcgttgattgctttttttgttctacctgagatgcactgtctcttgttagcaacacatcaatcatagaggaggttatttgttcttagGAAAACCGTTTGCGCCAAGAGATAGAAGACCTGGAGAAAGATACAGGGTACAAACTGCGAGTTCTTGCACAAAATTATCCTGATACACCTG

upper sequence: LOC_Os07g34950.2 (Oryza sativa), 3'ss of exon 2
lower sequence: AT5G52970.1 (Arabidopsis thaliana), 3'ss of exon 2
--------------------------------------------------------------tttcaatgtgcactttttgtctttgtactctatgttttg---gtggttataatctaga---ttataatagctaggagctatgtactgaacctgattttgttctt----------agGAAAACCGTCTGCGTCAAGAAATAGAAGATCTTGAGAAAGATACAGGATACAAGTTGAGAGTTCTTGCACAAAATTATCCTGATACACCAG
                                                               |   ||||| |  | || |  || | || ||  ||||    ||  || | || | ||   || |    |||    | | | |  |     |||| ||||||||          |||| ||  |  |   ||||||||| |   ||||||||||||||||||||| ||||||||||||  | || ||||| ||||| | ||| || |
gtatgcatgcttgtaccatccatctatttttgaggtttgattaaagcacttgtttcttgttaatgtcatgtggatctatt-tgcttattctgtagatttttagtgtatttctgattttgaatgttttcgccgcttttggttttcttttcttaatgatgttgttctttgagagttatagGAGAAGAGAATTGCTCAAGAAATCGCTAATCTTGAGAAAGATACAGGATTCAAGTTGAGAGTCTTGGCTCAAAACTATCCCGTTACCCCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatctagattataatagctaggagctatgtactgaacctgattttgttcttagGAAAACCGTCTGCGTCAAGAAATAGAAGATCTTGAGAAAGATACAGGATACAAGTTGAGAGTTCTTGCACAAAATTATCCTGATACACCAG
                                     acctgat  putative branch site (score: 4)
                                           ttttgttctt  CT-rich tract
      tagattataata  TA-rich tract