1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aggatgtgcaactgcagataatgaatccttagttgcaaaaaagagtagtgatacctataattgtgatgctgataataattgtgataatggatttgtggagATTTCACTAGAAGCATCATATTTGGAGAGTCAAGACCCTGTACTTCAAAATGGTGCCAAGCATGGTTTTGGTAATGCTAAACGGCATGTTCTCATATCTC
species | Oryza sativa |
transcript | LOC_Os07g33100.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tagtgatacctataattgtgatgctgataataattgtgataatggatttgtggagATTTCACTAGAAGCATCATATTTGGAGAGTCAAGACCCTGTACTTCAAAATGGTGCCAAGCATGGTTTTGGTAATGCTAAACGGCATGTTCTCATATCTC
tgctgat putative branch site (score: 3)
ataataattgtgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggatgtgcaactgcagataatgaatccttagttgcaaaaaagagtagtgatacctataattgtgatgctgataataattgtgataatggatttgtggagATTTCACTAGAAGCATCATATTTGGAGAGTCAAGACCCTGTACTTCAAAATGGTGCCAAGCATGGTTTTGGTAATGCTAAACGGCATGTTCTCATATCTC
- gatgtgc
- - - - -aactgca
- - - - - - - - - - -tgaatcc
- - - - - - - - - - - - - - - - - -caaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgct