1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gagagtttcagacattatccagtgccaagtttttacagttggcagagtaaggtgaagacctttgtactgttgatgtgaatatttcatttttatatgtcagGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTATGAAAACAAGGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTG
species | Oryza sativa |
transcript | LOC_Os07g29630.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAG GCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTATEST: gi|33682993|gb|CF311232.1|CF311232
genomic: AGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGgtgtgctgta ... tatatgtcagGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTAT
EST: AGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAG GCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTATEST: gi|88735899|gb|CI757474.1|CI757474
genomic: AGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGgtgtgctgta ... tatatgtcagGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTAT
EST: AGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAG GCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTATEST: gi|88737131|gb|CI760639.1|CI760639
genomic: AGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGgtgtgctgta ... tatatgtcagGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTAT
EST: AGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAG GCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTATEST: gi|88734183|gb|CI757691.1|CI757691
genomic: AGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGgtgtgctgta ... tatatgtcagGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTAT
EST: AGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAG GCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTATEST: gi|88738805|gb|CI762313.1|CI762313
genomic: AGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGgtgtgctgta ... tatatgtcagGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTAT
EST: AGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAG GCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTATEST: gi|88827421|gb|CI777986.1|CI777986
genomic: AGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGgtgtgctgta ... tatatgtcagGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTAT
EST: AGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAG GCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTATEST: gi|58587083|gb|CF985391.1|CF985391
genomic: AGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGgtgtgctgta ... tatatgtcagGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTAT
EST: AGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAG GCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTAT
genomic: AGAAGTCTATCAGGGAGGCTGCAAAGCGCAATGACATTGGATCCGCAAAGgtgtgctgta ... tatatgtcagGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTAT
agtaaggtgaagacctttgtactgttgatgtgaatatttcatttttatatgtcagGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTATGAAAACAAGGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTG
tgttgat putative branch site (score: 33)
tttcattttt putative PPT
atgtgaatatttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagagtttcagacattatccagtgccaagtttttacagttggcagagtaaggtgaagacctttgtactgttgatgtgaatatttcatttttatatgtcagGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTATGAAAACAAGGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - tgccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgatg