1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttggtggcctttggttatgacaattacctgtggcattggcatttccaatcgggttattcacatgctacttctttgcagATTCGTGCGCTTCGTGAGTACTCCGGAGGTGCTTGAGCGAGTGACGACGATAGAATCCGAGATCTTGCAGCTCGAGGACGCCATCTCTATTCAGAGCAAC
species | Oryza sativa |
transcript | LOC_Os07g26440.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGAGCTCAGGGGTTGGCGCGCCATGGTTTACAAGAGGCACCGTGGAGAG ATTCGTGCGCTTCGTGAGTACTCCGGAGGTGCTTGAGCGAGTGACGACGATEST: gi|29674607|gb|CB670882.1|CB670882
genomic: CCGAGCTCAGGGGTTGGCGCGCCATGGTTTACAAGAGGCACCGTGGAGAGgttggtggcc ... ttctttgcagATTCGTGCGCTTCGTGAGTACTCCGGAGGTGCTTGAGCGAGTGACGACGAT
EST: CCGAGCTCAGGGGTTGGCGCGCCATGGTTTACAAGAGGCACCGTGGAGAG ATTCGTGCGCTTCGTGAGTACTCCGGAGGTGCTTGAGCGAGTGACGACGATEST: gi|700402|gb|D46693.1|D46693
genomic: CCGAGCTCAGGGGTTGGCGCGCCATGGTTTACAAGAGGCACCGTGGAGAGgttggtggcc ... ttctttgcagATTCGTGCGCTTCGTGAGTACTCCGGAGGTGCTTGAGCGAGTGACGACGAT
EST: CCGAGCTCAGGGGTTGGCGCGCCATGGTTTACAAGAGGCACCGTGGAGAG ATTCGTGCGCTTCGTGAGTACTCCGGAGGTGCTTTAGCGAGTTACGACGAT
genomic: CCGAGCTCAGGGGTTGGCGCGCCATGGTTTACAAGAGGCACCGTGGAGAGgttggtggcc ... ttctttgcagATTCGTGCGCTTCGTGAGTACTCCGGAGGTGCTTGAGCGAGTGACGACGAT
ttacctgtggcattggcatttccaatcgggttattcacatgctacttctttgcagATTCGTGCGCTTCGTGAGTACTCCGGAGGTGCTTGAGCGAGTGACGACGATAGAATCCGAGATCTTGCAGCTCGAGGACGCCATCTCTATTCAGAGCAAC
ctacttcttt CT-rich tract
ttattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtggcctttggttatgacaattacctgtggcattggcatttccaatcgggttattcacatgctacttctttgcagATTCGTGCGCTTCGTGAGTACTCCGGAGGTGCTTGAGCGAGTGACGACGATAGAATCCGAGATCTTGCAGCTCGAGGACGCCATCTCTATTCAGAGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA