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...tgctattcattgttgatgactactgcaaattctttagttcctagtcttctagacgcatccaacatgtaattgagtggtgctctatttatcttcaatatagGTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAACAATCAGTTTCATCTCAATCAGGAGAACCTTCTGCAGTTGCTATACCCT
species | Oryza sativa |
transcript | LOC_Os07g25710.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAG GTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAAEST: gi|58685772|gb|CK074459.1|CK074459
genomic: AAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAGgtatgacagt ... ttcaatatagGTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAA
EST: TGACTGGAAAGATATTGATAACACAGCGTTGTACTGAAACTCAACCACAG GTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAAEST: gi|58669237|gb|CK057923.1|CK057923
genomic: TGACTGGAAAGATATTGATAACACAGC-TTGTACTGAAACTCAACCACAGgtatgacagt ... ttcaatatagGTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAA
EST: ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAG GTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCC-EST: gi|29613089|gb|CB618102.1|CB618102
genomic: ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAGgtatgacagt ... ttcaatatagGTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAA
EST: ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAG GTTGGACCAGCTGCGCAATCATCTGTCGCAGEST: gi|32948128|gb|BP184700.1|BP184700
genomic: ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAGgtatgacagt ... ttcaatatagGTTGGACCAGCTGCGCAATCATCTGTCGCAG
EST: ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAG GTTGGACCAGCTGCGCAEST: gi|55411384|gb|CV723760.1|CV723760
genomic: ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAGgtatgacagt ... ttcaatatagGTTGGACCAGCTGCGCA
EST: ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAG GTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAAEST: gi|33380900|gb|CF196243.1|CF196243
genomic: ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAGgtatgacagt ... ttcaatatagGTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAA
EST: ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAG GTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAA
genomic: ATGACTGGAAAGATATTGATAACACAGCTTGTACTGAAACTCAACCACAGgtatgacagt ... ttcaatatagGTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAA
cttctagacgcatccaacatgtaattgagtggtgctctatttatcttcaatatagGTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAACAATCAGTTTCATCTCAATCAGGAGAACCTTCTGCAGTTGCTATACCCT
ctctatttatcttc CT-rich tract
tatttatcttcaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctattcattgttgatgactactgcaaattctttagttcctagtcttctagacgcatccaacatgtaattgagtggtgctctatttatcttcaatatagGTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAACAATCAGTTTCATCTCAATCAGGAGAACCTTCTGCAGTTGCTATACCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
tgctatt
- - - - - -gttgatg
- - - - - - - - - -ctactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtaa