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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggtatactagtagattaccatggatgtgatttctttccagaacgttggtttgaccttgtagttgtgctccaaacagATAACTCAATTCTGCATGATCGCTTGACTAGCAG

Basic information

species Oryza sativa
transcript LOC_Os07g22950.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g22950.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G032699_T02 (Zea mays), 3'ss of exon 1
--------------------------------------------------------------------------------------------------------------------------------------gtggtatactagtagattaccatggatgtgatttctttccagaacgttggtttgaccttgtagttgtgctccaaacagATAACTCAATTCTGCATGATCGCTTGACTAGCAG
                                                                                                                                      |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||                                              
atcttttattttgaacaagcaaagcttcctggttcccttgtttacgtttggggttctataatttgctgaattgttgctataatatatatttttgccgcagGTGTGCGACGAGCTTGAGGACATGATGGAAGAAGGTGGCATACTAGTAGATTACCACGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTCGTAGTTG----------------------------------------------

upper sequence: LOC_Os07g22950.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA02G08350.1 (Glycine max), 3'ss of exon 2
----------------------------------------------------gtggtatactagtagattaccatggatgtgatttc-----tttccagaacgttggtttgaccttgtagttgtgctccaaacagATAACTCAATTCTGCATGATCGCTTGACTAGCAG----------------------------------
                                                     || ||||   ||  |||   | |  | | ||||      ||||   |    ||   ||| ||||  | |||  |  ||   |        ||| || |  | |   || ||   |                                   
tttgatattatcctcatcattgacacatttcttgtcatcttgtgtgtgctgcctgatatataggtttatt-ttacgagtttaatttgcatggtttctgtagGTCTGTGATGAACTTGAGGATGTTATGGAAGAGGGGGGAAACATTGTGGACTACCA--TGGCTGTGATTTCTTTCCCGAGCGTTGGTTTGATTGCGTGGTTG

upper sequence: LOC_Os07g22950.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA16G27430.1 (Glycine max), 3'ss of exon 2
-------------------------------------------------------------------------------------gtggtatactagtagatt-accatggatgtgatttctttccagaacgttggtttgaccttgtagttgtgctccaaacagATAACTCAATTCTGCATGATCGCTTGACTA-GCAG---
                                                                                     |     |  | |||| ||    ||| |  |||     ||   |||    ||    || |||| |       |    | |  |  ||  | |||   | | | |||| |  |  |   
tttaatattaatattatcctcatcattgatacttttcttgtcatcatgtgtatgttgcctgatttataggttttatgtctattttgcatggtttttgtagGTTTGTGATGAACTTGAGGATGTTATGGAAGAGGGGGGAAACATTGTGG--ACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatgtgatttctttccagaacgttggtttgaccttgtagttgtgctccaaacagATAACTCAATTCTGCATGATCGCTTGACTAGCAG
                          gtttgac  putative branch site (score: 4)
       atttcttt  TA-rich tract