1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatgaatgtaaaattcataccttattttgcacttgtgaaaaaactgatgttacttgacttccgtatatgcagGGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTTTCTGTAGATCCATCTGTAGAGAGCATGGATGCAACTGAGAATGATTCTACAA
species | Oryza sativa |
transcript | LOC_Os07g19060.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTCAGAGTTATTCAAGAAGCAAATTGACAATCTGAAGACTAATCATAGG GGCACATTTGTTCTTCAAGATAACCATTEST: gi|88581377|gb|CI698357.1|CI698357
genomic: GGTCAGAGTTATTCAAGAAGCAAATTGACAATCTGAAGACTAATCATAGGgtaatgaatg ... gtatatgcagGGCACATTTGTTCTTCAAGATAACCATT
EST: GGTCAGACTTATTCAAGAAGCAAATTGACAATCTGAAGAATAATCATAGG GGCACATTTGTTCTTCACGATAACCATTTCCGGTGGNTTACTCGTGTTTCTEST: gi|88329569|gb|CI650023.1|CI650023
genomic: GGTCAGAGTTATTCAAGAAGCAAATTGACAATCTGAAGACTAATCATAGGgtaatgaatg ... gtatatgcagGGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTTTCT
EST: GGTCAGAGTTATTCAAGAAGCAAATTGACAATCTGAAGACTAATCATAGG GGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTCTCTEST: gi|88578514|gb|CI687450.1|CI687450
genomic: GGTCAGAGTTATTCAAGAAGCAAATTGACAATCTGAAGACTAATCATAGGgtaatgaatg ... gtatatgcagGGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTTTCT
EST: GGTCAGAGTTATTCAAGAAGCAAATTGACAATCTGAAGACTAATCATAGG GGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTTTCTEST: gi|88388611|gb|CI683394.1|CI683394
genomic: GGTCAGAGTTATTCAAGAAGCAAATTGACAATCTGAAGACTAATCATAGGgtaatgaatg ... gtatatgcagGGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTTTCT
EST: GGTCAGAGTTATTCAAGAAGCAAATTGACAATCTGAAGACTAATCATAGG GGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTTTCEST: gi|88572188|gb|CI663759.1|CI663759
genomic: GGTCAGAGTTATTCAAGAAGCAAATTGACAATCTGAAGACTAATCATAGGgtaatgaatg ... gtatatgcagGGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTTTC
EST: GGTCAGAGTTATTCAAGAAGCAAATTGACAATCTGAAGACTAATCATAGG GGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTTTCTEST: gi|88296136|gb|CI667526.1|CI667526
genomic: GGTCAGAGTTATTCAAGAAGCAAATTGACAATCTGAAGACTAATCATAGGgtaatgaatg ... gtatatgcagGGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTTTCT
EST: GGTCAGAGTTATTCAAGAAGCAAATTGACAATCTGAAGACTAATCATAGG GGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTTTCTEST: gi|88573657|gb|CI665426.1|CI665426
genomic: GGTCAGAGTTATTCAAGAAGCAAATTGACAATCTGAAGACTAATCATAGGgtaatgaatg ... gtatatgcagGGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTTTCT
EST: GGTCAGAGTTATTCAAGAAGCAAATTGACAATCTGAAGACTAATCATAGG GGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTTTCT
genomic: GGTCAGAGTTATTCAAGAAGCAAATTGACAATCTGAAGACTAATCATAGGgtaatgaatg ... gtatatgcagGGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTTTCT
taccttattttgcacttgtgaaaaaactgatgttacttgacttccgtatatgcagGGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTTTCTGTAGATCCATCTGTAGAGAGCATGGATGCAACTGAGAATGATTCTACAA
cttccgt CT-rich tract
tgaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgaatgtaaaattcataccttattttgcacttgtgaaaaaactgatgttacttgacttccgtatatgcagGGCACATTTGTTCTTCAAGATAACCATTTCCGGTGGCTTACTCGTGTTTCTGTAGATCCATCTGTAGAGAGCATGGATGCAACTGAGAATGATTCTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA