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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagatctattctgcaaattcctcaccacctaaagtaaactgagggttataacattttgtgaatttattcatagttttataatattttgtgttattccagGTGGATGTGGGGCTTGTGTAATCCTTATAGCCAAGTATAATCCAAAGACAGATGAAGTGACTGAATTCAATGTAAACTCATGCCTAACACTTCTTTACAG

Basic information

species Oryza sativa
transcript LOC_Os07g18154.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58661713|gb|CK050393.1|CK050393
EST:     ACTAAATTGAATAGCAGGGGAGAGAGGGGGTCACCCTATCTAAGCCCTCT                         GTGGATGTGGGGCTTGTGTAATCCTTATAGCCAAGTATAATCCAAAGACAG
genomic: ACTAAATTGAATAGCAGGGGAGAGAGGGGGTCACCCTATCTAAGCCCTCTgtaagtacta ... gttattccagGTGGATGTGGGGCTTGTGTAATCCTTATAGCCAAGTATAATCCAAAGACAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttataacattttgtgaatttattcatagttttataatattttgtgttattccagGTGGATGTGGGGCTTGTGTAATCCTTATAGCCAAGTATAATCCAAAGACAGATGAAGTGACTGAATTCAATGTAAACTCATGCCTAACACTTCTTTACAG
 ttataac  putative branch site (score: 2)
                                              ttattcc  putative PPT
     aacattttgtgaattt  TA-rich tract