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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA

Basic information

species Oryza sativa
transcript LOC_Os07g14150.6
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G008216_T04 (Zea mays), 3'ss of exon 1
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
          | | ||| |||        | | |  || ||| || | || | |  |||      || |  ||  | | ||| |   | |     ||| |   ||  |||| | |   | |       |||  ||  |||  |  ||| |||||||||||||||| || ||||| ||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
---------gtaaattacctgaaggctaccattag-cagttgctc-taaggaaaattgtcattactttgatctcgttc-tgtaatcttcctggcagttaattccattatttgctgtgtggtttgatggttgatgta-tgtccatattttagGCTTGCAAAAAGCTTGGGAAAATTGAGCTCTCAGACTGCGAAATTTACGCGTCCTGCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAA

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G082924_T01 (Zea mays), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactc-acattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
      |   |||  |    |  ||   | | |     ||  ||  | | | |||    ||   |||   |  |||  |   |     | | |  ||| |   ||  ||||   ||||  | ||  |   | ||  | ||   |  ||| ||||||||||||||||||| |||||||||||||| || || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
-----gtaaattacctgaaggctaccattagcagtc--ttacttagtaaaattat---cattactttaatctctttttgcaatctgtctagca--gttaatttcattattt---gatatgtgcttgatggtctctgtatgcccatattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCGTCCTGCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAA

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA20G37210.1 (Glycine max), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttac-cacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                                |  | || | |||    |    |   |  | | ||  ||||  | || || |   ||| ||||||      |   ||||  || |  ||   |   || |  |||||||  |||||||     |||| || ||  | || |||||||| || || ||||| ||||| || |||||||||||||||||| ||||||| ||  | |
--------------------------------------------tgaaaccacatttatatttcctaaaccacatcacttattctactt--atttcttaatatacatcatttt------gtacctcatgttataatttgatatcatctatagGCTTGTCAAAAGCTGAATCAAATTGAACTTGCTGACTGTGAAATCTATGCTTCTTGCGAGCCTTGTCCAATGTGCTTTGGTGCAATTCATCTTTCAAGAA

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA13G17790.1 (Glycine max), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgaga-atatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                ||||| |   |  ||||   || |||| ||   |||     || |   ||||| |     || | | | |      | | ||  | |   | |||    ||  ||   |    ||| ||||||||||| |||||     | || || ||  | ||||||||||| || || |||||||| || ||||| ||||||||||||||| | || || || || |
--------------------------------aaatc-tcgctgtatgactcatgtgtgcattatttt----tttatagatgttata-----aactttatgc------agtgtcaaaaaatgattcatgcagtgttttcat----tttacagGCTTGCAAGAAGCTTAAGCAGATAGAACTTGCTGATTGTGAAATATATGCTTCTTGTGAACCTTGCCCCATGTGCTTTGGTGCAATCCACCTTTCTCGAA

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA16G22830.1 (Glycine max), 3'ss of exon 7
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                       |||  ||| |     | || ||   |||  || || || |    ||||     ||  |||     |  |||   ||||   || |   |   ||  |   || | ||| ||||||||  ||||| |     | || || || ||||| |||||||| || || |||||||| || ||||| ||||||||||| ||| |||| |||||  |  
---------------------------------------ttgaacattac----tctgcatttttttcagctttatgtgcagcaaac-----ataatttgtgcaattatta--ggatttgtattt-taaactcaatgatttcattttgcagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCTATGTGCTTTGGAGCAATTCACCTCTCAGGAG

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA09G09430.6 (Glycine max), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                          | ||| |   |   | | | | | |     ||| | |||  |     | ||   ||||    |  | |   |||||  || |   |   ||  |   || | ||| ||||||||  |||||||     | || || || ||||| |||||||| || || |||||||| || ||||||||||||||||| ||| | || ||||| ||  
------------------------------------------tacattactctgcatttcttcttcttcaaattt-gtgtgcaa-----caaacaatttatgcaattaatg--ggatatgtattt-taaactcaatgatttcattttacagGCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCAATGTGCTTTGGAGCAATCCACCTCTCACGAG

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA17G04720.2 (Glycine max), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatat-gtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                                ||   || || |  |  | |  ||||| |   |  || |  |   |   ||||        |      | |   | |||    ||  ||   || ||    |||||||| || |||||     | || || ||  ||||||||||||| || || |||||||| || ||||| ||||||||||||||| | || || || || |
------------------------------------------------agctcattgtatgactctgtatgccttcttttttctagatataataaactttatgcagtgttaaataaaaaatgattcatgcagtgttttcatttaa----cagGCTTGTAAGAAGCTTAAGCAGATAGAACTTGCAGATTGTGAAATATATGCTTCTTGTGAACCTTGCCCCATGTGCTTTGGTGCAATCCACCTTTCTCGAA

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA15G20970.2 (Glycine max), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                       |||| ||| |     | || ||   |||  || || || |    || |     ||  |||     |  |||   ||||   || |   |   ||  |   || | ||| ||||||||  ||||| |     | || || || ||||| |||||||| || || |||||||| || ||||| ||||||||||| ||| |||| ||||| ||  
---------------------------------------ttgtacattac----tctgcatttttttcagctttatgtgcagcaacc-----ataatttgtgcaattatta--ggatttgtattt-taaactcaatgatttcattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCTATGTGCTTTGGAGCAATTCACCTCTCACGAG

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: AT5G28050.2 (Arabidopsis thaliana), 3'ss of exon 4
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatc-cgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                              | |||| | | ||||  || |||   || |||      |||| | |        |  |  |  ||||| |||    | |   ||   | || ||   ||| | ||||| || || || ||    ||||||||| | ||||| || || |||||||| |||||||||||||| || |||||||| || ||  | ||||||||  |  
---------------------------------------------gtaagaaaa-gagtattacgcttgaatctcttg------aaacgttg-------caaaaaccggttttctgatgatgatttgaatc--cattgtg---aatgtgcagGCATGTAAGAAACTTAACAAAATCGAGTTATCAGAATGCGAGATTTACGCATCTTGTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGAC

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv14s0030g01610.t01 (Vitis vinifera), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaactt-cgaattgtttaccacaccattttcggatagctactcacattgtcgttctg--ttaaattttc----agGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                                           |   | ||| ||   |||  ||  |||  | | | |  || ||  | |  ||    ||||     |     |   | |  |  | |||  |||    |||| || || ||||||    |||| ||||| ||||| |||||||| || || ||||||||||| ||||||||||||||||||||  | ||||| ||  | |
----------------------------------------------------------aactagattgtgctcattgaatgacaaatctgcaagtgattcacttctcttttcagtgatactctttgtttctcatgcttggaatgaaaccttcctgcagGCATGTAAGAAGCTCAATCAAATTGAGCTATCAGACTGTGAAATCTATGCCTCTTGTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33680087|gb|CF308326.1|CF308326
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33670642|gb|CF298881.1|CF298881
EST:     GAAGCATACTGATCCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: GAAGCATACTGAT-CCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33679656|gb|CF307895.1|CF307895
EST:     AGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: AGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33681982|gb|CF310221.1|CF310221
EST:     GCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: GCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33680863|gb|CF309102.1|CF309102
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33684611|gb|CF312850.1|CF312850
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|88831118|gb|CI080542.1|CI080542
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33685711|gb|CF313950.1|CF313950
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33692465|gb|CF320704.1|CF320704
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33681656|gb|CF309895.1|CF309895
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33674876|gb|CF303115.1|CF303115
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33680845|gb|CF309084.1|CF309084
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33681144|gb|CF309383.1|CF309383
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33683237|gb|CF311476.1|CF311476
EST:     GAAGCATACTGATCCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: GAAGCATACTGAT-CCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33683641|gb|CF311880.1|CF311880
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33680984|gb|CF309223.1|CF309223
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33820667|gb|CF336143.1|CF336143
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33683216|gb|CF311455.1|CF311455
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33683215|gb|CF311454.1|CF311454
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|88473090|gb|CI410361.1|CI410361
EST:     ACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: ACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33680622|gb|CF308861.1|CF308861
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33653433|gb|CF276047.1|CF276047
EST:     GCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: GCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33681049|gb|CF309288.1|CF309288
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33685446|gb|CF313685.1|CF313685
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|15852831|gb|BI805627.1|BI805627
EST:     AAGCAGTACTGATCCNACTGTCACATGCTGAAGTGACTGCNATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: AAGCA-TACTGATCCAACTG-CACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33794731|gb|CF323245.1|CF323245
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 62 (downstream exon)
Score: 34

AGTCGTTGTCCGTAATGATGAAGTAGTAGTCAGCTGCCATAACATGGTTCTGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                        tactcac  putative branch site (score: 34)
                                                ttttc  putative PPT
                                      ttctgttaaatttt  TA-rich tract