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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA

Basic information

species Oryza sativa
transcript LOC_Os07g14150.5
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G008216_T04 (Zea mays), 3'ss of exon 1
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
          | | ||| |||        | | |  || ||| || | || | |  |||      || |  ||  | | ||| |   | |     ||| |   ||  |||| | |   | |       |||  ||  |||  |  ||| |||||||||||||||| || ||||| ||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
---------gtaaattacctgaaggctaccattag-cagttgctc-taaggaaaattgtcattactttgatctcgttc-tgtaatcttcctggcagttaattccattatttgctgtgtggtttgatggttgatgta-tgtccatattttagGCTTGCAAAAAGCTTGGGAAAATTGAGCTCTCAGACTGCGAAATTTACGCGTCCTGCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAA

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G082924_T01 (Zea mays), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactc-acattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
      |   |||  |    |  ||   | | |     ||  ||  | | | |||    ||   |||   |  |||  |   |     | | |  ||| |   ||  ||||   ||||  | ||  |   | ||  | ||   |  ||| ||||||||||||||||||| |||||||||||||| || || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
-----gtaaattacctgaaggctaccattagcagtc--ttacttagtaaaattat---cattactttaatctctttttgcaatctgtctagca--gttaatttcattattt---gatatgtgcttgatggtctctgtatgcccatattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCGTCCTGCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAA

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA20G37210.1 (Glycine max), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttac-cacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                                |  | || | |||    |    |   |  | | ||  ||||  | || || |   ||| ||||||      |   ||||  || |  ||   |   || |  |||||||  |||||||     |||| || ||  | || |||||||| || || ||||| ||||| || |||||||||||||||||| ||||||| ||  | |
--------------------------------------------tgaaaccacatttatatttcctaaaccacatcacttattctactt--atttcttaatatacatcatttt------gtacctcatgttataatttgatatcatctatagGCTTGTCAAAAGCTGAATCAAATTGAACTTGCTGACTGTGAAATCTATGCTTCTTGCGAGCCTTGTCCAATGTGCTTTGGTGCAATTCATCTTTCAAGAA

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA13G17790.1 (Glycine max), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgaga-atatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                ||||| |   |  ||||   || |||| ||   |||     || |   ||||| |     || | | | |      | | ||  | |   | |||    ||  ||   |    ||| ||||||||||| |||||     | || || ||  | ||||||||||| || || |||||||| || ||||| ||||||||||||||| | || || || || |
--------------------------------aaatc-tcgctgtatgactcatgtgtgcattatttt----tttatagatgttata-----aactttatgc------agtgtcaaaaaatgattcatgcagtgttttcat----tttacagGCTTGCAAGAAGCTTAAGCAGATAGAACTTGCTGATTGTGAAATATATGCTTCTTGTGAACCTTGCCCCATGTGCTTTGGTGCAATCCACCTTTCTCGAA

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA16G22830.1 (Glycine max), 3'ss of exon 7
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                       |||  ||| |     | || ||   |||  || || || |    ||||     ||  |||     |  |||   ||||   || |   |   ||  |   || | ||| ||||||||  ||||| |     | || || || ||||| |||||||| || || |||||||| || ||||| ||||||||||| ||| |||| |||||  |  
---------------------------------------ttgaacattac----tctgcatttttttcagctttatgtgcagcaaac-----ataatttgtgcaattatta--ggatttgtattt-taaactcaatgatttcattttgcagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCTATGTGCTTTGGAGCAATTCACCTCTCAGGAG

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA09G09430.6 (Glycine max), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                          | ||| |   |   | | | | | |     ||| | |||  |     | ||   ||||    |  | |   |||||  || |   |   ||  |   || | ||| ||||||||  |||||||     | || || || ||||| |||||||| || || |||||||| || ||||||||||||||||| ||| | || ||||| ||  
------------------------------------------tacattactctgcatttcttcttcttcaaattt-gtgtgcaa-----caaacaatttatgcaattaatg--ggatatgtattt-taaactcaatgatttcattttacagGCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCAATGTGCTTTGGAGCAATCCACCTCTCACGAG

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA17G04720.2 (Glycine max), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatat-gtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                                ||   || || |  |  | |  ||||| |   |  || |  |   |   ||||        |      | |   | |||    ||  ||   || ||    |||||||| || |||||     | || || ||  ||||||||||||| || || |||||||| || ||||| ||||||||||||||| | || || || || |
------------------------------------------------agctcattgtatgactctgtatgccttcttttttctagatataataaactttatgcagtgttaaataaaaaatgattcatgcagtgttttcatttaa----cagGCTTGTAAGAAGCTTAAGCAGATAGAACTTGCAGATTGTGAAATATATGCTTCTTGTGAACCTTGCCCCATGTGCTTTGGTGCAATCCACCTTTCTCGAA

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA15G20970.2 (Glycine max), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                       |||| ||| |     | || ||   |||  || || || |    || |     ||  |||     |  |||   ||||   || |   |   ||  |   || | ||| ||||||||  ||||| |     | || || || ||||| |||||||| || || |||||||| || ||||| ||||||||||| ||| |||| ||||| ||  
---------------------------------------ttgtacattac----tctgcatttttttcagctttatgtgcagcaacc-----ataatttgtgcaattatta--ggatttgtattt-taaactcaatgatttcattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCTATGTGCTTTGGAGCAATTCACCTCTCACGAG

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: AT5G28050.2 (Arabidopsis thaliana), 3'ss of exon 4
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatc-cgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                              | |||| | | ||||  || |||   || |||      |||| | |        |  |  |  ||||| |||    | |   ||   | || ||   ||| | ||||| || || || ||    ||||||||| | ||||| || || |||||||| |||||||||||||| || |||||||| || ||  | ||||||||  |  
---------------------------------------------gtaagaaaa-gagtattacgcttgaatctcttg------aaacgttg-------caaaaaccggttttctgatgatgatttgaatc--cattgtg---aatgtgcagGCATGTAAGAAACTTAACAAAATCGAGTTATCAGAATGCGAGATTTACGCATCTTGTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGAC

upper sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv14s0030g01610.t01 (Vitis vinifera), 3'ss of exon 3
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaactt-cgaattgtttaccacaccattttcggatagctactcacattgtcgttctg--ttaaattttc----agGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                                                           |   | ||| ||   |||  ||  |||  | | | |  || ||  | |  ||    ||||     |     |   | |  |  | |||  |||    |||| || || ||||||    |||| ||||| ||||| |||||||| || || ||||||||||| ||||||||||||||||||||  | ||||| ||  | |
----------------------------------------------------------aactagattgtgctcattgaatgacaaatctgcaagtgattcacttctcttttcagtgatactctttgtttctcatgcttggaatgaaaccttcctgcagGCATGTAAGAAGCTCAATCAAATTGAGCTATCAGACTGTGAAATCTATGCCTCTTGTGAGCCTTGCCCAATGTGCTTTGGTGCTATACATCTTTCAAGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33680087|gb|CF308326.1|CF308326
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33670642|gb|CF298881.1|CF298881
EST:     GAAGCATACTGATCCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: GAAGCATACTGAT-CCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|396941150|gb|HO188359.1|HO188359
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33679656|gb|CF307895.1|CF307895
EST:     AGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: AGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33681982|gb|CF310221.1|CF310221
EST:     GCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: GCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33680863|gb|CF309102.1|CF309102
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|88831118|gb|CI080542.1|CI080542
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33685711|gb|CF313950.1|CF313950
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33692465|gb|CF320704.1|CF320704
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33681656|gb|CF309895.1|CF309895
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33674876|gb|CF303115.1|CF303115
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33680845|gb|CF309084.1|CF309084
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33681144|gb|CF309383.1|CF309383
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33683237|gb|CF311476.1|CF311476
EST:     GAAGCATACTGATCCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: GAAGCATACTGAT-CCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33683641|gb|CF311880.1|CF311880
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33680984|gb|CF309223.1|CF309223
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33820667|gb|CF336143.1|CF336143
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33683216|gb|CF311455.1|CF311455
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|29671778|gb|CB668053.1|CB668053
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33683215|gb|CF311454.1|CF311454
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|88473090|gb|CI410361.1|CI410361
EST:     ACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: ACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33680622|gb|CF308861.1|CF308861
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|29671779|gb|CB668054.1|CB668054
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33653433|gb|CF276047.1|CF276047
EST:     GCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: GCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33681049|gb|CF309288.1|CF309288
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33685446|gb|CF313685.1|CF313685
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|15852831|gb|BI805627.1|BI805627
EST:     AAGCAGTACTGATCCNACTGTCACATGCTGAAGTGACTGCNATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: AAGCA-TACTGATCCAACTG-CACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
EST: gi|33794731|gb|CF323245.1|CF323245
EST:     TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAG                         GCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG
genomic: TGAAGCATACTGATCCAACTGCACATGCTGAAGTGACTGCAATAAGAGAGgtgaaatgct ... aaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaccacaccattttcggatagctactcacattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA
                        tactcac  putative branch site (score: 1)
                                                ttttc  putative PPT
                                      ttctgttaaatttt  TA-rich tract