1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attacttggaactcaattatctaaagagcatttccagtagaacaaaactaaaaggaaaacgtgttgctaccttgtttactaagattaagcatccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGATGGACCTGATGACTGCTCTGCAGCTTGTGATGAAGAAGTCAAGCGCTCAT
species | Oryza sativa |
transcript | LOC_Os07g12650.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGC GGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGATEST: gi|6727454|gb|AU082119.1|AU082119
genomic: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGCgtaagtttcc ... atccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGAT
EST: GTCGTCGCCTGTCGGGCCCNTCGGGTCTTTCCTAGCGCAGGAGACATGGC GNAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGAAGAGCCGATEST: gi|4716547|gb|AU057663.1|AU057663
genomic: GTCGTCG-CTGTC-GGCCCCTCGGGTCTTT-CTAGCGCAGGAGACATGGCgtaagtttcc ... atccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGAT
EST: CCCCTNCGGGTCTTTTCTAGCGCAGGAGACATGGCC GAAAGAGACTCCCAGTTGAGCCCCCACCTGCCCCCGGTTCTTGGAGAGCCEST: gi|88722319|gb|CI745829.1|CI745829
genomic: CCCCT-CGGGTC-TTTCTAGCGCAGGAGACATGG-Cgtaagtttcc ... atccatgcagGGAAGAGACT-CCAGTTGAGGCCCCACCTG-CCCCGGTTCTTGGAGAG-C
EST: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGC GGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGATEST: gi|13806613|gb|AU181586.1|AU181586
genomic: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGCgtaagtttcc ... atccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGAT
EST: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGC GGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGATEST: gi|88358899|gb|CI619403.1|CI619403
genomic: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGCgtaagtttcc ... atccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGAT
EST: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGC GGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGATEST: gi|396941191|gb|HO188400.1|HO188400
genomic: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGCgtaagtttcc ... atccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGAT
EST: GTCGTCGTCGCAGTCGGCTCCTCGGGTCTTTCGAGTGCAGGAGACATGGC GGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCTGTTCTTGGAGAGCCGATEST: gi|88357562|gb|CI623616.1|CI623616
genomic: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGCgtaagtttcc ... atccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGAT
EST: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGC GGAAGAGACTCCAGTTGAGGCCCCEST: gi|55432687|gb|CV729364.1|CV729364
genomic: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGCgtaagtttcc ... atccatgcagGGAAGAGACTCCAGTTGAGGCCCC
EST: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCA-GAGAC-TGGC GGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGATEST: gi|568095|gb|D38930.1|D38930
genomic: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGCgtaagtttcc ... atccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGAT
EST: CGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGC GGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGATEST: gi|88332492|gb|CI651652.1|CI651652
genomic: CGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGCgtaagtttcc ... atccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGAT
EST: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGC GGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGCTCTTGGAGAGCCGATEST: gi|10423675|gb|AU108196.1|AU108196
genomic: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGCgtaagtttcc ... atccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGAT
EST: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGC GGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGATEST: gi|88339791|gb|CI649048.1|CI649048
genomic: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGCgtaagtttcc ... atccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGAT
EST: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGC GGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGATEST: gi|6934807|gb|AU082344.1|AU082344
genomic: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGCgtaagtttcc ... atccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGAT
EST: GTCNTCGTCGCTGTCGGCCCCTCGGGTCTGTCTAGCGCAGGAGACATGGC GGAAGAGACTCCAGTTGAGGCCCCACNTGCCCCGGTTCTTGGAGAGCCGATEST: gi|218485304|gb|FG956287.1|FG956287
genomic: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGCgtaagtttcc ... atccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGAT
EST: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGC GGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGATEST: gi|58586800|gb|CF985108.1|CF985108
genomic: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGCgtaagtttcc ... atccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGAT
EST: GTCGCTGTCGG-CCCTCGGGTCTTTCTAGCGCAGGAGACATGGC GGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGATEST: gi|427734|gb|D23869.1|D23869
genomic: GTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGCgtaagtttcc ... atccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGAT
EST: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGC GGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGAT
genomic: GTCGTCGTCGCTGTCGGCCCCTCGGGTCTTTCTAGCGCAGGAGACATGGCgtaagtttcc ... atccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGAT
aactaaaaggaaaacgtgttgctaccttgtttactaagattaagcatccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGATGGACCTGATGACTGCTCTGCAGCTTGTGATGAAGAAGTCAAGCGCTCAT
aactaaa putative branch site (score: 2)
tttactaagattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attacttggaactcaattatctaaagagcatttccagtagaacaaaactaaaaggaaaacgtgttgctaccttgtttactaagattaagcatccatgcagGGAAGAGACTCCAGTTGAGGCCCCACCTGCCCCGGTTCTTGGAGAGCCGATGGACCTGATGACTGCTCTGCAGCTTGTGATGAAGAAGTCAAGCGCTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - -gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - actaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct