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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacaacttgacctgcatatctcttgacaagcatatcccccaaattacatattgaatcatgtaatttcaacatgttgcttgttttgtagTTCCCTTTCTTTTGCAGTGACCGTGAATACATTTTTGGGCGGCGGATATGGGAATCTGGGAAAACTTACTATTGTGTTACAAAG

Basic information

species Oryza sativa
transcript LOC_Os07g08760.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g08760.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G124965_T02 (Zea mays), 3'ss of exon 3
gtatgacaacttgacctgcatatctcttgacaagcatatcccccaaattacatattgaatcatgtaatttcaacatgttgcttgttttgtagTTCCCTTTCTTTTGCAGTGACCGTGAATACATTTTTGGGCGGCGGATATGGGAATCTGGGAAAACTTACTATTGTGTTACAAAG
                ||   | ||  ||     |    |     |  | ||| || ||   |  |||| |||||||||| |||||||  ||||||| |||||||||||||||||||||||||| |||||  | || ||||||||||||||||| |||||||||||||||||||||
-------------gtttgtccagcttctgttgttc---cctgtttatgttcatgttaaactct-caattccaacatgttgtttgttttccagTTCCCATTCTTTTGCAGTGACCGTGAATACATCTTTGGAGGACGCATATGGGAATCTGGGAAGACTTACTATTGTGTTACAAAG

upper sequence: LOC_Os07g08760.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G121223_T02 (Zea mays), 3'ss of exon 4
gtatgacaacttgacctgcatatctcttgacaagcatatcccccaaattacatattgaatcatgtaatttcaacatgttgcttgttttgtagTTCCCTTTCTTTTGCAGTGACCGTGAATACATTTTTGGGCGGCGGATATGGGAATCTGGGAAAACTTACTATTGTGTTACAAAG
          ||| || || | | |  |  |  |  |||   |        || || ||   |  |||| |||||||||| |||||||  ||||||| |||||||||||||||||||||||||| |||||  | || ||||||||||||||||| ||||||||||||||||| |||
--------gtttgtccagcttctgttgttccctgtgtatgttc--------atgttaaactct-caattccaacatgttgtttgttttccagTTCCCGTTCTTTTGCAGTGACCGTGAATACATCTTTGGAGGACGCATATGGGAATCTGGGAAGACTTACTATTGTGTTACTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcccccaaattacatattgaatcatgtaatttcaacatgttgcttgttttgtagTTCCCTTTCTTTTGCAGTGACCGTGAATACATTTTTGGGCGGCGGATATGGGAATCTGGGAAAACTTACTATTGTGTTACAAAG
                                           cttgtttt  CT-rich tract
       aaattacatattgaat  TA-rich tract