1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatggtggttcctgccttaatttactttcaccttcagtcatatcatacctagtatggtggttcagtggatctgatgctgctcctcattcttgtcagGAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGATAAAAACAAGCCATCTAAATCTTCTAATGCTGTCAGGTTGTTTGCCTGC
species | Oryza sativa |
transcript | LOC_Os07g07974.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCTTCACTTCTCCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAA GAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGAEST: gi|33677610|gb|CF305849.1|CF305849
genomic: ATCTTCACTTCTCCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAAgtatggtggt ... ttcttgtcagGAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGA
EST: ATCTTCACTTCTCCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAA GAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGAEST: gi|33677327|gb|CF305566.1|CF305566
genomic: ATCTTCACTTCTCCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAAgtatggtggt ... ttcttgtcagGAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGA
EST: ATCTTCACTTCTCCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAA GAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGAEST: gi|58658088|gb|CK046768.1|CK046768
genomic: ATCTTCACTTCTCCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAAgtatggtggt ... ttcttgtcagGAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGA
EST: ATCTTCACTTCTGCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAA GAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGAEST: gi|33677415|gb|CF305654.1|CF305654
genomic: ATCTTCACTTCTCCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAAgtatggtggt ... ttcttgtcagGAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGA
EST: ATCTTCACTTCTCCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAA GAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGAEST: gi|88301191|gb|CI594717.1|CI594717
genomic: ATCTTCACTTCTCCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAAgtatggtggt ... ttcttgtcagGAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGA
EST: ATCTTCACTTCTCGGCACGACAATGCGCAAAAGGAACCGAAGCTATCAAA GAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGAEST: gi|58692151|gb|CK080838.1|CK080838
genomic: ATCTTCACTTCTCCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAAgtatggtggt ... ttcttgtcagGAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGA
EST: ATCTTCACTTCTCCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAA GAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGAEST: gi|33679115|gb|CF307354.1|CF307354
genomic: ATCTTCACTTCTCCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAAgtatggtggt ... ttcttgtcagGAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGA
EST: ATCTTCACTTCTCCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAA GAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGAEST: gi|29686776|gb|CB683051.1|CB683051
genomic: ATCTTCACTTCTCCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAAgtatggtggt ... ttcttgtcagGAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGA
EST: ATCTTCACTTCTCCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAA GAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGA
genomic: ATCTTCACTTCTCCGCACGACAATGCGCAAAAGGAATCGAAGCTATCAAAgtatggtggt ... ttcttgtcagGAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGA
atcatacctagtatggtggttcagtggatctgatgctgctcctcattcttgtcagGAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGATAAAAACAAGCCATCTAAATCTTCTAATGCTGTCAGGTTGTTTGCCTGC
atctgat putative branch site (score: 38)
ctgctcctcattctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtggttcctgccttaatttactttcaccttcagtcatatcatacctagtatggtggttcagtggatctgatgctgctcctcattcttgtcagGAGCTCTTTCGCTGAATTCTCTGAAAGTGAGGTTTGTGCCGATGAAAGCGATAAAAACAAGCCATCTAAATCTTCTAATGCTGTCAGGTTGTTTGCCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG