1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgtgtggccctataatttagatttatctgcaagtaggtgcctgctgtgacgaaatacctttgttcatagtggttgctgatgatgcagGTATCCACACTGCCTTTTCTTTCTTGAGCTCCTCCAAAATGCGAATTTCCGGAATGCAATGGCACATCCAGCAAGCAAG
species | Oryza sativa |
transcript | LOC_Os07g07020.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCAAGTATCTCAAGTATTGGCAGCGTCCGGAGTACATCAAGTACATAAT GTATCCACACTGCCTTTTCTTTCTTGAGCTCCTCCAAAATGCGAATTTCCGEST: gi|117250322|gb|CT843994.1|CT843994
genomic: CTCAAGTATCTCAAGTATTGGCAGCGTCCGGAGTACATCAAGTACATAATgtgtgtggcc ... gatgatgcagGTATCCACACTGCCTTTTCTTTCTTGAGCTCCTCCAAAATGCGAATTTCCG
EST: CTCAAGTATCTCAAGTATTGGCAGCGTCCGGAGTACATCAAGTACATAAT GTATCCACACTGCCTTTTCTTTCTTGAGCTCCTCCAAAATGCGAATTTCCGEST: gi|27921088|gb|CB096896.1|CB096896
genomic: CTCAAGTATCTCAAGTATTGGCAGCGTCCGGAGTACATCAAGTACATAATgtgtgtggcc ... gatgatgcagGTATCCACACTGCCTTTTCTTTCTTGAGCTCCTCCAAAATGCGAATTTCCG
EST: CTCAAGTATCTCAAGTATTGGCAGCGTCCGGAGTACATCAAGTACATAAT GTATCCACACTGCCTTTTCTTTCTTGAGCTCCTCCAAAATGCGAATTTCCGEST: gi|25801128|gb|CA757089.1|CA757089
genomic: CTCAAGTATCTCAAGTATTGGCAGCGTCCGGAGTACATCAAGTACATAATgtgtgtggcc ... gatgatgcagGTATCCACACTGCCTTTTCTTTCTTGAGCTCCTCCAAAATGCGAATTTCCG
EST: CTCAAGTATCTCAAGTATTGGCAGCGTCCGGAGTACATCAAGTACATAAT GTATCCACACTGCCTTTTCTTTCTTGAGCTCCTCCAAAATGCGAATTTCCG
genomic: CTCAAGTATCTCAAGTATTGGCAGCGTCCGGAGTACATCAAGTACATAATgtgtgtggcc ... gatgatgcagGTATCCACACTGCCTTTTCTTTCTTGAGCTCCTCCAAAATGCGAATTTCCG
gtaggtgcctgctgtgacgaaatacctttgttcatagtggttgctgatgatgcagGTATCCACACTGCCTTTTCTTTCTTGAGCTCCTCCAAAATGCGAATTTCCGGAATGCAATGGCACATCCAGCAAGCAAG
tgctgat putative branch site (score: 3)
aaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtggccctataatttagatttatctgcaagtaggtgcctgctgtgacgaaatacctttgttcatagtggttgctgatgatgcagGTATCCACACTGCCTTTTCTTTCTTGAGCTCCTCCAAAATGCGAATTTCCGGAATGCAATGGCACATCCAGCAAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG