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gtaaaggttattactttgtcagtgtaatcaggaatgccgtatgatttcttagaaattttagttcagatcatccagtgacattattttgattttggttttcttgatgtttattctcatactctagAATTGCGATGAGCTTAAGGGATCTGTGGTAGTTGGATATGATGCTTTCAAAGCTCATCTTGCACAGGCAGCTTTGTTATCTGCTGACGCAG
species | Oryza sativa |
transcript | LOC_Os07g06980.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTGCTTGAACTGTACAGTGCCAAACATGGAGGGGTTTACACATTGTCAG AATTGCGATGAGCTTAAGGGATCTGTGGTAGTTGGATATGATGCTTTCAAAEST: gi|117232793|gb|CT842287.1|CT842287
genomic: TTTGCTTGAACTGTACAGTGCCAAACATGGAGGGGTTTACACATTGTCAGgtaaaggtta ... catactctagAATTGCGATGAGCTTAAGGGATCTGTGGTAGTTGGATATGATGCTTTCAAA
EST: TTTGCTTGAACTGTACAGTGCCAAACATGGAGGGGTTTACACATTGTCAG AATTGCGATGAGCTTAAGGGATCTGTGGTAGTTGGATATGATGCTTTCAAAEST: gi|29644493|gb|CB649500.1|CB649500
genomic: TTTGCTTGAACTGTACAGTGCCAAACATGGAGGGGTTTACACATTGTCAGgtaaaggtta ... catactctagAATTGCGATGAGCTTAAGGGATCTGTGGTAGTTGGATATGATGCTTTCAAA
EST: TTTGCTTGAACTGTACAGTGCCAAACATGGAGGGGTTTACACATTGTCAG AATTGCGATGAGCTTAAGGGATCTGTGGTAGTTGGATATGATGCTTTCAAAEST: gi|55410299|gb|CV722675.1|CV722675
genomic: TTTGCTTGAACTGTACAGTGCCAAACATGGAGGGGTTTACACATTGTCAGgtaaaggtta ... catactctagAATTGCGATGAGCTTAAGGGATCTGTGGTAGTTGGATATGATGCTTTCAAA
EST: TTTGCTTGAACTGTACAGTGCCAAACATGGAGGGGTTTACACATTGTCAG AATTGCGATGAGCTTAAGGGATCTGTGGTAGTTGGATATGATGCTTTCAAA
genomic: TTTGCTTGAACTGTACAGTGCCAAACATGGAGGGGTTTACACATTGTCAGgtaaaggtta ... catactctagAATTGCGATGAGCTTAAGGGATCTGTGGTAGTTGGATATGATGCTTTCAAA
atccagtgacattattttgattttggttttcttgatgtttattctcatactctagAATTGCGATGAGCTTAAGGGATCTGTGGTAGTTGGATATGATGCTTTCAAAGCTCATCTTGCACAGGCAGCTTTGTTATCTGCTGACGCAG
tcttgat putative branch site (score: 17)
tttattctc CT-rich tract
acattattttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaggttattactttgtcagtgtaatcaggaatgccgtatgatttcttagaaattttagttcagatcatccagtgacattattttgattttggttttcttgatgtttattctcatactctagAATTGCGATGAGCTTAAGGGATCTGTGGTAGTTGGATATGATGCTTTCAAAGCTCATCTTGCACAGGCAGCTTTGTTATCTGCTGACGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT