Sequence
atgc intronic sequence ATGC exonic sequencegttggtttcactttctcacctggaatttgttttatgtaattatcggacagatagaatttattgtgataatggtatagtttggtgcatgcagGAGTGGTAGAAATCCTTTAGCCATAATTCTCGCACCTACTAGAGAACTTGCTAGACAAGTTGAGAAGGAATTTAAGGAATCTGCTCCTTTGGACTCTCTT
Basic information
species | Oryza sativa |
transcript | LOC_Os07g05050.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os07g05050.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G080512_T01 (Zea mays), 3'ss of exon 2
gttggtttcactttctcacctggaatttgttttatgtaattatcggacagatagaatttattgtgataatggtatagtttggtgcatgcagGAGTGGTAGAAATCCTTTAGCCATAATTCTCGCACCTACTAGAGAACTTGCTAGACAAGTTGAGAAGGAATTTAAGGAATCTGCTCCTTTGGACTCTCTT
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gttcgtttctctttcacatgtggaattcttttaatttatctaccagggagatagaatatattgtaataattgcatagtacgatgcatgcagAAATGGCAGGAATCCTTTAGCCATAATCTTGGCACCAACAAGAGAACTTGCTCGGCAGGTTGAGAAGGAGTTTAGAGAATCTGCTCCCTTGGACACCCTC
upper sequence: LOC_Os07g05050.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G407382_T01 (Zea mays), 3'ss of exon 2
gttggtttcactttctcacctggaatttgttttatgtaattatcggacagatagaatttattgtgataatggtatagtttggtgcatgcagGAGTGGTAGAAATCCTTTAGCCATAATTCTCGCACCTACTAGAGAACTTGCTAGACAAGTTGAGAAGGAATTTAAGGAATCTGCTCCTTTGGACTCTCTT
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gttcgtttctctttcacatgtggaattcttttaatttatctaccagggagatataatatattgtaataattgcatagtacgaagcatgcagATTTGGCAGGAATCCTTTAGCCATAATCTTGGCACCAACAAGAGAACTTGCTCGGCAGGTTGAGAAGGAATTTAGAGAATCTGCTCCCTTGGACACCCTC
upper sequence: LOC_Os07g05050.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G407382_T02 (Zea mays), 3'ss of exon 2
gttggtttcactttctcacctggaatttgttttatgtaattatcggacagatagaatttattgtgataatggtatagtttggtgcatgcagGAGTGGTAGAAATCCTTTAGCCATAATTCTCGCACCTACTAGAGAACTTGCTAGACAAGTTGAGAAGGAATTTAAGGAATCTGCTCCTTTGGACTCTCTT---------
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gttcgtttctctttcacatgtggaattcttttaatttatctaccagggagatataatatattgtaataattgcatagtacgaagcatgcagatttggcagGAATCCTTTAGCCATAATCTTGGCACCAACAAGAGAACTTGCTCGGCAGGTTGAGAAGGAATTTAGAGAATCTGCTCCCTTGGACACCCTCTGTGTATATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29680607|gb|CB676882.1|CB676882EST: GACAGGATTCTTCGTCACAATGAGAAGAATGG GAGTGGTAGAAATCCTTTAGCCATAATTCTCGCACCTACTAGAGAACTTGC
genomic: GACAGGATTCTTCGTCACAATGAGAAGAATGGgttggtttca ... gtgcatgcagGAGTGGTAGAAATCCTTTAGCCATAATTCTCGCACCTACTAGAGAACTTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taattatcggacagatagaatttattgtgataatggtatagtttggtgcatgcagGAGTGGTAGAAATCCTTTAGCCATAATTCTCGCACCTACTAGAGAACTTGCTAGACAAGTTGAGAAGGAATTTAAGGAATCTGCTCCTTTGGACTCTCTT
aatttattgtgataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggtttcactttctcacctggaatttgttttatgtaattatcggacagatagaatttattgtgataatggtatagtttggtgcatgcagGAGTGGTAGAAATCCTTTAGCCATAATTCTCGCACCTACTAGAGAACTTGCTAGACAAGTTGAGAAGGAATTTAAGGAATCTGCTCCTTTGGACTCTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA