1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttccactatccattctatggccggtttaggctgagccactattgttgagtaaatcttggtgctataccattggctttttattgttctccctcttgtgcagTAGGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACG
species | Oryza sativa |
transcript | LOC_Os07g01930.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTG TAGGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCCEST: gi|88461626|gb|CI695464.1|CI695464
genomic: GTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTGgtacgcaccc ... tcttgtgcagTAGGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCC
EST: GTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTG TAGGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCCEST: gi|66917010|gb|CX103858.1|CX103858
genomic: GTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTGgtacgcaccc ... tcttgtgcagTAGGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCC
EST: GTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTG TAGGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCCEST: gi|58601999|gb|CK012527.1|CK012527
genomic: GTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTGgtacgcaccc ... tcttgtgcagTAGGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCC
EST: GTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTG TAGGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCCEST: gi|33680135|gb|CF308374.1|CF308374
genomic: GTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTGgtacgcaccc ... tcttgtgcagTAGGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCC
EST: GTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTG TAGGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCC
genomic: GTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTGgtacgcaccc ... tcttgtgcagTAGGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCC
tgagtaaatcttggtgctataccattggctttttattgttctccctcttgtgcagTAGGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACG
ctttttattgttctcc CT-rich tract
tttttattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccactatccattctatggccggtttaggctgagccactattgttgagtaaatcttggtgctataccattggctttttattgttctccctcttgtgcagTAGGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACG
- - - - tccattc
- - - - - - - - - - - - - - - ctgagcc
- - - - - - - - - - - - - - - - - - - - -ttgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgcta