1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctcattatacctaagccatccaatcaccttctggacactcgtgatggttttagagcatatcccatcaagtcattctaataagtgttcctgctttgtgcagCCCAAGTGGACCCACTTTATTCTAGTAAACAG
species | Oryza sativa |
transcript | LOC_Os06g49810.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTCGTCGCGCTCTGCGCCCTCGCCGCCTTCCCTGTCGCCGTCACCGGAG CCCAAGTGGACCCACTTTATTCTAGTAAACAGEST: gi|33675709|gb|CF303948.1|CF303948
genomic: TTTCGTCGCGCTCTGCGCCCTCGCCGCCTTCCCTGTCGCCGTCACCGGAGgtgaggagtt ... ctttgtgcagCCCAAGTGGACCCACTTTATTCTAGTAAACAG
EST: TTTCGTCGCGCTCTGCGCCCTCGCCGCCTTCCCTGTCGCCGTCACCGGAG CCCAAGTGGACCCACTTTATTCTAGTAAACAGEST: gi|58670782|gb|CK059468.1|CK059468
genomic: TTTCGTCGCGCTCTGCGCCCTCGCCGCCTTCCCTGTCGCCGTCACCGGAGgtgaggagtt ... ctttgtgcagCCCAAGTGGACCCACTTTATTCTAGTAAACAG
EST: TTTCGTCGCGCTCTGCGCCCTCGCCGCCTTCCCTGTCGCCGTCACCGGAG CCCAAGTGGACCCACTTTATTCTAGTAAACAGEST: gi|58609868|gb|CK037901.1|CK037901
genomic: TTTCGTCGCGCTCTGCGCCCTCGCCGCCTTCCCTGTCGCCGTCACCGGAGgtgaggagtt ... ctttgtgcagCCCAAGTGGACCCACTTTATTCTAGTAAACAG
EST: TTTCGTCGCGCTCTGCGCCCTCGCCGCCTTCCCTGTCGCCGTCACCGGAG CCCAAGTGGACCCACTTTATTCTAGTAAACAGGTACT
genomic: TTTCGTCGCGCTCTGCGCCCTCGCCGCCTTCCCTGTCGCCGTCACCGGAGgtgaggagtt ... ctttgtgcagCCCAAGTGGACCCACTTTATTCTAGTAAACAGGTACT
ggttttagagcatatcccatcaagtcattctaataagtgttcctgctttgtgcagCCCAAGTGGACCCACTTTATTCTAGTAAACAG
ttctaat putative branch site (score: 5)
ttcctgcttt putative PPT
attctaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcattatacctaagccatccaatcaccttctggacactcgtgatggttttagagcatatcccatcaagtcattctaataagtgttcctgctttgtgcagCCCAAGTGGACCCACTTTATTCTAGTAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - gccatcc
- - - - - - - - - - - - - ccttctg
- - - - - - - - - - - - - - - - - - - -cgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcctg