1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctcctagccagttttcaaaaggaaaaacaaatttcattaccacagaaagtgtttaacagaatggagatggccttgactcttttttttttctttaatacagTTGTATATTATTATTTCTTCTCGAGCCAAGTTTGTAGAAGTGTTGTATATGGAGAACAACCAAGAAACAG
species | Oryza sativa |
transcript | LOC_Os06g49440.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTAGCCCTCTGTTGTTACACCTTCTTGCTCATGCCAGGTTTCATTCAAG TTGTATATTATTATTTCTTCTCGAGCCAAGTTTGTAGAAGTGTTGTATATG
genomic: CCTAGCCCTCTGTTGTTACACCTTCTTGCTCATGCCAGGTTTCATTCAAGgttagccttg ... tttaatacagTTGTATATTATTATTTCTTCTCGAGCCAAGTTTGTAGAAGTGTTGTATATG
aaagtgtttaacagaatggagatggccttgactcttttttttttctttaatacagTTGTATATTATTATTTCTTCTCGAGCCAAGTTTGTAGAAGTGTTGTATATGGAGAACAACCAAGAAACAG
ccttgactcttttttt CT-rich tract
actcttttttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcctagccagttttcaaaaggaaaaacaaatttcattaccacagaaagtgtttaacagaatggagatggccttgactcttttttttttctttaatacagTTGTATATTATTATTTCTTCTCGAGCCAAGTTTGTAGAAGTGTTGTATATGGAGAACAACCAAGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - aaaaggaa
- - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - -tttcatt
- - - - - - - - - - - - - - - - - - - - cacagaa